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Fig. 2. A model for PTGS in plants. Transgene loci arranged as inverted repeats or viruses can directly produce dsRNA. Like dsRNA injected in animals, they can be cut by dsRNase (e.g. the DICER enzyme of Drosophila), thus generating siRNAs. The latter could target mRNA to an RNA-degradation complex (named RISC in Drosophila). Transgene loci carrying a single copy expressed at high level could transcribe abRNAs owing to changes in chromatin structure induced by DDM1. These abRNAs could be used as templates by an RdRP (SGS2/SDE1) to synthesize dsRNAs. This RdRP could be helped by two proteins of unknown function (SGS3 and AGO1) and an RNA helicase (SDE3), which are not required for PTGS induced by IR transgene loci that directly produce dsRNA. The dsRNAs could also induce methylation of transgene DNA (involving MET1), thus reinforcing its ability to produce abRNAs.
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