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Fig. 2. RT-PCR analysis of syntaxin isoform expression in RPE-J cells. mRNA of
syntaxin 3 and of different alternatively spliced isoforms of syntaxin 2 were
amplified by RT-PCR. For syntaxin 2 isoform determination, two primer pairs
were used that had been previously shown to distinguish between isoforms 2A,
2B, 2C and 2D (Quinones et al.,
1999 ). Primer combination 21 generates the following
PCR products: syntaxin 2A (200 bp), 2D (228 bp), no products for syntaxin 2B
and 2C. Primer combination 22 generates the following PCR products:
syntaxin 2A (700 bp), 2B (600 bp), 2C (170 bp), 2C 170 bp), 2D (728 bp). The
respective positions of the different products are indicated by arrows. A
shows that transcripts for syntaxin 2A, B and C can be detected in rat kidney.
Rat brain expresses all four syntaxin 2 isoforms as previously reported. As
shown in B, reaction products for syntaxins 2A and 2B were detected from RPE-J
cells but not 2C, 2D. For the detection of syntaxin 3A transcripts, a single
primer pair was used. B shows that syntaxin-3A-specific reaction product was
detected in the positive control (lane `syn3', rat syntaxin 3A cDNA as
template), whereas no syntaxin 3A product could be detected from RPE-J cells.
As a negative control, no products were detected in samples that were not
reverse transcribed (-RT).
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