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Fig. 1. Structural and molecular aspects of the trypanosome flagellum. (A) Drawing of cross-section through the T. brucei flagellum, indicating predicted location of proteins studied in this work. Microtubules are shown in black, nexin links in green, radial spokes in magenta, dynein arms in orange and central-pair projections in yellow. The PFR is shown in blue, with its proximal, intermediate and distal domain (relative to the axoneme). The inset shows a magnified central pair and its projections. To measure orientation of the central pair relative to the PFR, lines were drawn on the axis passing through the two microtubules or through the proximal domains of the PFR (dashed grey lines) and angles measured. (B) Cross-sections of wild-type flagellum from whole cells. (Left) The flagellum appears to lie on its side, with the PFR in proximity of the FAZ filament (dark spot between subpellicular microtubules) and the axoneme closer to the four specialised microtubules associated to the smooth endoplasmic reticulum (left side of the image). (Right) The PFR is positioned between the cell body and the axoneme. (C) Cross-section of demembranated flagellum where dynein arms, radial spokes and central-pair projections are more visible. (D) Longitudinal section of the flagellum showing the axoneme (Axo) with the central pair (CP) microtubules and some projections and the paraflagellar rod (PFR) confined between the axoneme and the cell body. (E) Representation of proteins analysed in this study with their main particular domains (from Pfam-domain searches). (F) Percentage of identity between flagellum proteins from T. brucei and two other kinetoplastids, T. cruzi and L. major, and between human, mouse and Chlamydomonas reinhardtii. Alignment was performed using the Jotun-Hein method, except for TbDNAH where Clustal W was used.
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