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Fig. 5. Surface renderings of segmented inner ear volumes facilitate assessment of differences in morphology and allow unbiased measurement of inner ear volume. Panels A-F are optical sections acquired by two-photon microscopy of 48 hour post-fertilization zebrafish stained using Texas-Red-conjugated phalloidin. Lateral is up and rostral is to the right. Sections of the most ventral region of the ear (A,B) show that the posterior macula of the cdh2 MO-injected embryo (arrow in B) contains shorter stereociliary bundles compared with those of the control (arrow in A). Sections taken from more dorsal regions of the ears (E,F) show semicircular canals in the control embryo (E) which are absent in the cdh2 MO-injected embryo (F). To show the relationship of the optical sections to the surface rendered volumes, the optical sections from panels E and F are shown cutting through surface renderings of the volume of the inner ear in control (G) and in cdh2 MO-injected embryos (H). In the bottom panels, the entire volume of the inner ears are shown in control (I) and in cdh2 MO-injected embryos (J) relative to the most ventral optical sections. Panels K and L are shown to provide orientation of the rendered volume relative to the optical sections. Shown directly below are the surface renderings of inner ear volumes from a 48 hpf control (M,O,Q,S) and cdh2 MO-injected (N,P,R,T) embryos, first in the same orientations as in K and L, then rotated. Image volumes were segmented and volume measurements were generated using Amira software (Table 2). Semicircular canals pass through the control volume (M,O,Q,S), but are entirely absent from the cdh2 MO-injected embryo volume (N,P,R,T). In M-P, lateral is up, rostral is right and the view is of the dorsal side of the volume. In Q and R, dorsal is up, caudal is right and the view is of the lateral side. In S and T, dorsal is up caudal is right and the view is of the medial side. Bar, 50 µm.
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