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Commentary |
Department of Biochemistry, Weill Medical College of Cornell University, New York, NY 10021, USA
Author for correspondence (e-mail: haowu{at}med.cornell.edu )
| Summary |
|---|
|
|
|---|
Key words: TRAF, TNF, IL-1R/TLR, NF-
B, AP-1
| Introduction |
|---|
|
|
|---|
|
The TRAF proteins are characterized by the presence of a novel TRAF domain
at the C-terminus, which consists of a coiled-coil domain followed by a
conserved TRAF-C domain (Rothe et al.,
1994
) (Fig. 1). The
TRAF domain plays an important role in TRAF function by mediating
self-association and upstream interactions with receptors and other signaling
proteins (Takeuchi et al.,
1996
). The N-terminal portion of most TRAF proteins contains a
RING finger and several zinc finger motifs, which are important for downstream
signaling events (Rothe et al.,
1995
; Takeuchi et al.,
1996
).
|
Many of the biological effects of TRAF signaling appear to be mediated
through the activation of transcription factors of the NF-
B and AP-1
family. NF-
B promotes the expression of genes involved in inflammatory
and anti-apoptotic responses (Baeuerle and
Baltimore, 1996
; Beg and
Baltimore, 1996
; Liu et al.,
1996
). It is activated by the I
B kinase (IKK), which
consists of two kinase subunits, IKK
and IKKß, and a regulatory
subunit, IKK
/NEMO (DiDonato et al.,
1997
; Regnier et al.,
1997
; Zandi et al.,
1997
; Krappmann et al.,
2000
). Phosphorylation and degradation of I
B lead to the
release and translocation of NF-
B to the nucleus to activate
transcription (Stancovski and Baltimore,
1997
). AP-1 activity is stimulated by mitogen-activated protein
(MAP) kinases through either direct phosphorylation or transcription of AP-1
components (Karin, 1996
). MAP
kinases, which include Ser/Thr kinases such as JNKs/SAPKs, ERKs and p38s, are
at the downstream end of a three-tiered system that also contains MAP kinase
kinase (MAP2K) and MAP kinase kinase kinase (MAP3K). The stimulation of AP-1
activity by MAP kinases may elicit stress responses and promote both cell
survival and cell death (Shaulian and
Karin, 2001
).
As adapter proteins, TRAFs elaborate receptor signal transduction by
serving as both a convergent and a divergent platform. Therefore, different
TRAFs are created with their own specific biological roles. Their distinct
upstream and downstream signaling pathways may determine this specificity.
Recent structural and biochemical data have provided us with a much better
understanding of the upstream signaling mechanism of TRAFs. Many of the
current studies of TRAF downstream signaling focus on the activation of
NF-
B and AP-1 transcription factors. However, accumulating evidence
points to the differential regulation of this apparently common downstream
pathway as well as to additional TRAF-specific pathways for eliciting
different biological functions. We further suggest that signaling-dependent
TRAF trafficking may be another crucial regulatory factor. This commentary
will focus on the common and distinct molecular mechanisms of TRAF-mediated
signal transduction. For complementary information, please refer to other
recent reviews on TRAFs and TNF receptors
(Wallach et al., 1999
;
Inoue et al., 2000
;
Locksley et al., 2001
;
Wajant et al., 2001
).
| Specific biological functions of mammalian TRAFs |
|---|
|
|
|---|
|
|
Since its discovery, TRAF2 has become the prototypical member of the TRAF
family. The paradigm of TRAF-mediated NF-
B and MAP kinase activation
was first demonstrated using both TRAF2 overexpression and a dominant-negative
phenotype of a TRAF2 derivative lacking the RING domain
(Rothe et al., 1995
;
Hsu et al., 1996b
;
Takeuchi et al., 1996
;
Duckett et al., 1997
;
Reinhard et al., 1997
;
Arch et al., 1998
). TRAF2
transcripts have been detected in almost every tissue
(Rothe et al., 1994
), making
TRAF2 the most widely expressed TRAF family member.
TRAF2 plays a cytoprotective role, which was demonstrated by the premature
death of TRAF2-deficient mice owing to severe runting. In addition,
TRAF2-deficient cells are highly sensitive to TNF-induced cell death
(Yeh et al., 1997
). The lack
of TRAF2 or the expression of a dominant-negative form of TRAF2 only led to a
modest defect in TNF-induced NF-
B activation but resulted in a severe
reduction of JNK/SAPK activation (Lee et
al., 1997
; Yeh et al.,
1997
; Devin et al.,
2000
). Recent data suggest that TRAF2 is important for NF-
B
activation, but this role may be partially compensated for by the highly
related TRAF5 (see below) (Nakano et al.,
2000
). The sensitization to TNF-induced cell death in the absence
of TRAF2 must have been largely due to an NF-
B-independent mechanism
(Lee et al., 1997
;
Yeh et al., 1997
;
Lee et al., 1998
). One
possibility may be related to the failure to recruit other proteins such as
cellular inhibitors of apoptosis proteins (cIAPs) to the TNFR1 receptor
signaling complex in the absence of TRAF2
(Wang et al., 1998
;
Park et al., 2000
). TNF
toxicity through TNFR1 appears to contribute significantly to the survival
defects in TRAF2-deficient mice because a double deficiency in TRAF2 and TNFR1
resulted in increased survival (Yeh et
al., 1999
).
TRAF1, unlike TRAF2 and other TRAFs, does not have the N-terminal RING and
zinc-finger domains (Rothe et al.,
1994
). TRAF1 expression is fairly restricted
(Rothe et al., 1994
;
Mosialos et al., 1995
) and can
be upregulated in lymphoid tumors and transformed lymphoid cells
(Durkop et al., 1999
;
Zapata et al., 2000
,
Zapata et al., 2000
). The
current data are consistent with the idea that TRAF1 is an NF-
B
inducible protein that protects cells from apoptosis and plays a role in the
feedback regulation of receptor signaling
(Speiser et al., 1997
;
Wang et al., 1998
;
Carpentier and Beyaert, 1999
;
Schwenzer et al., 1999
;
Nolan et al., 2000
). It
appears that TRAF1 works in conjunction with TRAF2 and cIAPs to fully suppress
TNF-induced apoptosis. This may be achieved through the direct suppression of
caspase activation in the TNFR1 signaling complex by cIAPs, which are
specifically recruited through TRAF1 and TRAF2
(Wang et al., 1998
;
Park et al., 2000
).
Although TRAF3 possesses a putative domain organization similar to TRAF2
and TRAF5, overexpression of TRAF3 did not activate NF-
B
(Rothe et al., 1995
). In
contrast, it was reported that TRAF3 recruitment to LTßR led to cell
death (Force et al., 1997
),
and that both N- and C-terminal domains of TRAF3 negatively regulate
NF-
B activation induced by Ox40
(Takaori-Kondo et al., 2000
).
However, it has also been shown that there are a variety of mRNA species of
TRAF3 and that some splice variants do induce NF-
B activation
(van Eyndhoven et al., 1999
).
Similar to TRAF2-deficient mice, TRAF3-deficient mice have poor perinatal and
neonatal survival (Xu et al.,
1996
). However, despite the runting phenotype and the hypotrophy
of the spleen and thymus, which is similar to the phenotype displayed by
TRAF2-deficient mice, the immune system is fairly normal except in the
T-cell-dependent antigen responses (Xu et
al., 1996
).
The biological importance of TRAF4 was revealed by the gross tracheal
malformation displayed by TRAF4-deficient mice
(Shiels et al., 2000
), which
suggested a parallel function of TRAF4 with the Drosophila Toll
pathway in body organization. Analysis of TRAF4 expression has also implicated
TRAF4 in the function of neural multipotent cells and epithelial stem cells in
adult mammals (Krajewska et al.,
1998
; Masson et al.,
1998
). Even though there is evidence that TRAF4 may interact with
several receptors in the TNF receptor superfamily
(Krajewska et al., 1998
;
Ye et al., 1999
,
Ye et al., 1999
), further
studies are required to elucidate the molecular pathway of TRAF4
signaling.
TRAF5 is considered to be a close functional and structural homologue of
TRAF2, and overexpression of TRAF5 can also activate NF-
B and AP-1
transcription factors (Ishida et al.,
1996
, Ishida et al.,
1996
; Nakano et al.,
1996
). However, deletion of TRAF5 did not cause perinatal
lethality, perhaps owing to the more restricted expression pattern of TRAF5
compared with TRAF2 (Ishida et al.,
1996
, Ishida et al.,
1996
; Nakano et al.,
1996
). TRAF5 deficiency led to more specific defects in CD40- and
CD27-mediated lymphocyte activation, whereas TNF-mediated NF-
B
activation was not severely affected
(Nakano et al., 1999
).
Interestingly, TRAF2 and 5 double knockout animals did exhibit a severe
reduction in TNF-induced NF-
B activation, which suggests that TRAF5 and
TRAF2 are partially functionally redundant
(Nakano et al., 2000
).
TRAF6 possesses a unique receptor-binding specificity that results in its
crucial role as the signaling mediator for both the TNF receptor superfamily
and the IL-1R/TLR superfamily. As shown by targeted gene ablation, TRAF6 is
functionally important for both TRANCE-R-mediated osteoclast activation and
CD40 signaling (Lomaga et al.,
1999
; Naito et al.,
1999
; Wong et al., 1999b), even though both CD40 and TRANCE-R can
also signal through TRAF2 (Pullen et al.,
1998
; Wong et al.,
1998
). In the IL-1R/TLR superfamily, lack of TRAF6 leads to
defective signaling by IL-1 and IL-18 as well as hypo-responsiveness to
bacterial lipopolysaccharides (LPS), the cell wall component of Gram-negative
bacteria, which signals through TLR4
(Lomaga et al., 1999
;
Naito et al., 1999
). These
observations place TRAF6 as an important player in innate immunity against
pathogens.
The functional divergence of TRAFs appears to correlate well with a
proposed evolutionary relationship among TRAFs in mammals and other organisms
on the basis of sequence conservation in the TRAF domain and gene structure
analysis (Grech et al., 2000
)
(Fig. 1). In this hypothesis,
TRAF4 and TRAF6 precursors appear to have arisen earlier in evolution. We
propose that TRAF4 and TRAF6 may be functional descendents of dTRAF1 and
dTRAF2, which have been implicated in Toll signal transduction
(Zapata et al., 2000
,
Zapata et al., 2000
;
Shen et al., 2001
). This
argument points to the existence of a yet to be identified TRAF4-interacting
receptor. On the other hand, TRAF1, 2, 3 and 5 appear to be more recent
siblings in the TRAF family (Grech et al.,
2000
). This observation is supported by the similar
receptor-binding specificity of these four TRAFs towards the TNF receptor
superfamily (see below) and the lack of known homologues of these receptors
beyond mammals.
| Common and distinct signal transduction mechanisms up-stream of TRAFs |
|---|
|
|
|---|
A common mechanism for the membrane-proximal event in TRAF signaling has
been revealed by the conserved trimeric association in the crystal structure
of the TRAF domain of TRAF2 (Park et al.,
1999
; McWhirter et al.,
1999
). The structure contains a stalk of a trimeric coiled-coil
and a cap of trimerized TRAF-C domain with a novel anti-parallel
ß-sandwich fold, leading to a prominent mushroom shaped structure
(Fig. 3A). This trimeric
stoichiometry of TRAFs provides a structural basis for signal transduction
across the cellular membrane after receptor trimerization by trimeric
extracellular ligands in the TNF superfamily
(Banner et al., 1993
).
Interestingly, recent studies suggest that specific ligand-induced receptor
trimerization may be primed by non-signaling receptor pre-association prior to
ligand binding (Chan et al.,
2000
; Siegel et al.,
2000
). Thermodynamic characterization revealed the low affinity
nature of monomeric TRAF2-receptor interactions, which confirms the importance
of oligomerization-based affinity enhancement or avidity in receptor-mediated
TRAF recruitment (Ye and Wu,
2000
).
|
Structural and biochemical studies have shown that a single TRAF protein
recognizes diverse receptor sequences via a conserved mode of interaction but
with a range of different affinities. In several different TRAF2 complexes,
receptor sequences bind invariably to the surface groove on the TRAF-C domain
of TRAF2 in an extended conformation, making main chain hydrogen bonding
interactions with the edge of the ß-sandwich structure
(Park et al., 1999
;
McWhirter et al., 1999
;
Ye et al., 1999
,
Ye et al., 1999
). The chain
direction of the receptor peptides allows the receptors to immediately latch
on to the TRAF-C domain after exiting from their transmembrane regions.
Although TRAF2-binding sequences from different receptors bear limited
sequence homology, their interactions with TRAF2 are preserved by a few
conserved structural contacts, as shown in the consensus (P/S/T/A)x(Q/E)E
(Ye et al., 1999
,
Ye et al., 1999
)
(Fig. 3B). A deviation from
this consensus, which bears the sequence of PxQxxD, is present in the human
Epstein-Barr virus LMP-1 protein and binds to the same surface of TRAF2 via
both similar and distinct features (Ye et
al., 1999
, Ye et al.,
1999
). Thermodynamic characterization further showed variable
affinities of TRAF2 with different receptor sequences, which are probably a
consequence of affinity modulations by non-conserved residues within and
beyond the core binding motif (Ye and Wu,
2000
) (Table
3).
|
Further structural analyses have also revealed how several different TRAFs
can recognize a single receptor. The amino-acid residues on the TRAF2 surface
used for receptor interactions are conserved among TRAF1, 2, 3 and 5,
explaining the overlapping specificity of these TRAFs for different receptors
(Park et al., 1999
;
Ye et al., 1999
,
Ye et al., 1999
). However, an
identical sequence from CD40 exhibits alternative binding modes to TRAF2 and
TRAF3, suggesting that this conserved interaction may vary to some extent in
different TRAFs, which modulates the strengths of the interactions
(Fig. 3C). In the TRAF3
complex, receptor residues distal to the central core sequence also interact
with TRAF3, leading to the formation of a hairpin on the TRAF3 surface, which
contributes strongly to TRAF3 interaction
(Ni et al., 2000
).
The distinct mode of TRAF2 recruitment by TRADD was revealed by the crystal
structure of the TRAF2-TRADD complex (Park
et al., 2000
) (Fig.
3D). The more extensive TRAF2-TRADD interface overlaps spatially
and therefore potentially competes with TRAF2-receptor interactions.
Biochemical characterization using surface plasmon resonance has shown that
the TRAF2-TRADD interaction is unique in two distinct ways. First, TRAF2 has a
significantly higher affinity for TRADD than for peptide motifs in direct
receptor interactions (Table
3), which leads to more efficient initiation of TRAF2 signaling by
TRADD. Second, TRADD has specificity for only TRAF1 and TRAF2, but not other
TRAF family members (Fig. 2A). It appears that TRAF1 and TRAF2 work in conjunction with associated caspase
inhibitors cIAPs to fully suppress TNF-induced apoptosis in the TNFR1
signaling complex (Wang et al.,
1998
; Park et al.,
2000
), leading to dominance of survival signaling for this
receptor under most circumstances.
TRAF6 directly interacts with CD40 and TRANCE-R, which are members of the
TNF receptor superfamily (Ishida et al.,
1996
, Ishida et al.,
1996
; Pullen et al.,
1998
; Darnay et al.,
1999
). For the signal transduction of the IL-1R/TLR superfamily,
TRAF6 is indirectly coupled to receptor activation via IRAK and the IRAK-TRAF6
pathway in evolutionarily analogous to the Pelle-dTRAF pathway in
Drosophila (Liu et al.,
1999
; Zapata et al.,
2000
, Zapata et al.,
2000
; Shen et al.,
2001
). Even though biochemical characterizations suggest that
TRAF6-receptor and TRAF6-IRAK interactions differ from receptor recognition by
other TRAFs (Pullen et al.,
1998
; Darnay et al.,
1999
), elucidation of the molecular mechanism of TRAF6 upstream
interactions awaits further structural information.
| TRAF downstream signal transduction and regulation |
|---|
|
|
|---|
B and AP-1 activation has been extensively studied
for the representative TRAF family members TRAF2 and TRAF6, which apparently
utilize different molecular pathways (Fig.
2B). Two models of TRAF2 downstream signaling pathways have been
proposed. The TRAF2-mediated NF-
B activation may involve the direct
recruitment of the IKK complex in cooperation with RIP
(Yeh et al., 1997
B activation (Baud et al.,
1999
B and AP-1 activation. These include NIK
(Malinin et al., 1997
The activation of both NF-
B and AP-1 by TRAF6 in the IL-1 signaling
pathway appears to involve a MAP3K known as TAK1
(Yamaguchi et al., 1995
;
Ninomiya-Tsuji et al., 1999
)
and two adapter proteins TAB1 (Shibuya et
al., 1996
) and TAB2 (Takaesu
et al., 2000
). Upon stimulation, TRAF6 associates with endogenous
TAK1 and TAB1 (Ninomiya-Tsuji et al.,
1999
) and interacts with TAB2 following the translocation of TAB2
from the membrane to the cytosol (Takaesu
et al., 2001
). Activated TAK1 appears to phosphorylate NIK, which
in turn activates IKK (Shirakabe et al.,
1997
; Ninomiya-Tsuji et al.,
1999
) and initiates the MAP kinase pathway. Surprisingly, it has
been shown recently that ubiquitination plays an important role in TAK1
activation (Deng et al., 2000
;
Wang et al., 2001
,
Wang et al., 2001
). It
appears that as a RING-domain-containing protein, TRAF6 operates together with
a ubiquitin-conjugating enzyme system to catalyze the synthesis of unique
polyubiquitin chains essential for TRAF6 downstream signaling.
The ability of multiple TRAFs to activate NF-
B and AP-1
transcription factors raises the question of how are the specific biological
functions of different TRAFs realized. We propose that the different signaling
pathways, such as those utilized by TRAF2 and TRAF6, may lead to preferential
activation of specific NF-
B and AP-1 components and therefore the
transcription of an overlapping but non-identical set of genes. In addition,
many TRAF-interacting proteins have been identified and shown to regulate the
activation of NF-
B and AP-1 in a TRAF-specific manner. For example, A20
is a TRAF1- and TRAF2-interacting protein
(Song et al., 1996
) that
inhibits NF-
B activation and regulates TNF-induced cell death responses
(Lee et al., 2000
). A complete
review of these regulatory proteins is beyond the scope of this commentary;
however, their potential functions should not be overlooked.
A different level of regulation was revealed by several recent gene
knockout studies in which certain proteins were shown to regulate NF-
B
transcriptional activity without affecting its DNA-binding activity. For
example, in mice deficient in the MAP3K NIK, normal NF-
B DNA-binding
activity was observed upon treatment by a variety of cytokines, including TNF,
IL-1 and LTß. However, gene transcription upon LTßR activation was
selectively affected by the absence of NIK
(Yin et al., 2001
).
Therefore, as different TRAFs may recruit a different set of these regulatory
proteins, their biological functions may be modulated by them.
In addition to NF-
B and AP-1 activation, TRAF proteins have been
implicated in the crossover to additional signaling pathways. One such example
is TRAF6-mediated activation of Src family kinases. In osteoclasts at least,
TRAF6 plays an indispensable role in the activation of c-Src and subsequently
the anti-apoptotic kinase PKB/Akt (Coffer
et al., 1998
; Wong et al., 1999a). Similarly, TRAF6-dependent
activation of another protein tyrosine kinase Syk has been shown to mediate
IL-1-induced chemokine production (Yamada
et al., 2001
). Therefore, the differential regulation of
NF-
B and AP-1, as well as the specific activation of other signaling
pathways, may collectively contribute to the specific functions of TRAFs.
| Signaling-dependent TRAF trafficking |
|---|
|
|
|---|
Although the redistribution of TRAFs into membrane fractions may lead to a
more sustained signaling of the activated receptor, it could also lead to a
depletion of cytoplasmic TRAFs and therefore downregulate subsequent
TRAF-dependent signal transduction (Arch et
al., 2000
). Some TRAFs can accumulate in perinuclear compartments
after a particular signaling event (Arch et
al., 2000
; Force et al.,
2000
) but the eventual fate of these TRAFs is not clear. One
possibility is proteasome-dependent TRAF degradation
(Duckett and Thompson, 1997
;
Brown et al., 2001
), which
would limit the recycling of TRAFs for further signal transduction.
Interestingly, several TRAFs have been shown to interact with proteins of the
cytoskeleton and/or of particular membranes. These include the p62
nucleoporin, a component of the nuclear pore central plug
(Gamper et al., 2000
), the
membrane-organizing protein caveolin-1
(Feng et al., 2001
), the
microtubule-binding protein MIP-T3 (Ling
and Goeddel, 2000
) and filamin
(Leonardi et al., 2000
).
Clearly, this is an important field that requires further exploration and may
hold many of the clues to the specificity of TRAF-mediated signal
transduction.
| Perspectives |
|---|
|
|
|---|
| Acknowledgments |
|---|
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H. Li, A. Mittal, P. K. Paul, M. Kumar, D. S. Srivastava, S. C. Tyagi, and A. Kumar Tumor Necrosis Factor-related Weak Inducer of Apoptosis Augments Matrix Metalloproteinase 9 (MMP-9) Production in Skeletal Muscle through the Activation of Nuclear Factor-{kappa}B-inducing Kinase and p38 Mitogen-activated Protein Kinase: A POTENTIAL ROLE OF MMP-9 IN MYOPATHY J. Biol. Chem., February 13, 2009; 284(7): 4439 - 4450. [Abstract] [Full Text] [PDF] |
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S. Ning, A. D. Campos, B. G. Darnay, G. L. Bentz, and J. S. Pagano TRAF6 and the Three C-Terminal Lysine Sites on IRF7 Are Required for Its Ubiquitination-Mediated Activation by the Tumor Necrosis Factor Receptor Family Member Latent Membrane Protein 1 Mol. Cell. Biol., October 15, 2008; 28(20): 6536 - 6546. [Abstract] [Full Text] [PDF] |
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M. Zheng, S. E. Morgan-Lappe, J. Yang, K. M. Bockbrader, D. Pamarthy, D. Thomas, S. W. Fesik, and Y. Sun Growth Inhibition and Radiosensitization of Glioblastoma and Lung Cancer Cells by Small Interfering RNA Silencing of Tumor Necrosis Factor Receptor-Associated Factor 2 Cancer Res., September 15, 2008; 68(18): 7570 - 7578. [Abstract] [Full Text] [PDF] |
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B. Lamothe, A. D. Campos, W. K. Webster, A. Gopinathan, L. Hur, and B. G. Darnay The RING Domain and First Zinc Finger of TRAF6 Coordinate Signaling by Interleukin-1, Lipopolysaccharide, and RANKL J. Biol. Chem., September 5, 2008; 283(36): 24871 - 24880. [Abstract] [Full Text] [PDF] |
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A. Guarini, S. Chiaretti, S. Tavolaro, R. Maggio, N. Peragine, F. Citarella, M. R. Ricciardi, S. Santangelo, M. Marinelli, M. S. De Propris, et al. BCR ligation induced by IgM stimulation results in gene expression and functional changes only in IgVH unmutated chronic lymphocytic leukemia (CLL) cells Blood, August 1, 2008; 112(3): 782 - 792. [Abstract] [Full Text] [PDF] |
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S. Huang, S. Yuan, L. Guo, Y. Yu, J. Li, T. Wu, T. Liu, M. Yang, K. Wu, H. Liu, et al. Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity Genome Res., July 1, 2008; 18(7): 1112 - 1126. [Abstract] [Full Text] [PDF] |
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L. Sabbagh, G. Pulle, Y. Liu, E. N. Tsitsikov, and T. H. Watts ERK-Dependent Bim Modulation Downstream of the 4-1BB-TRAF1 Signaling Axis Is a Critical Mediator of CD8 T Cell Survival In Vivo J. Immunol., June 15, 2008; 180(12): 8093 - 8101. [Abstract] [Full Text] [PDF] |
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C. H. Yang, A. Murti, S. R. Pfeffer, M. Fan, Z. Du, and L. M. Pfeffer The Role of TRAF2 Binding to the Type I Interferon Receptor in Alternative NF{kappa}B Activation and Antiviral Response J. Biol. Chem., May 23, 2008; 283(21): 14309 - 14316. [Abstract] [Full Text] [PDF] |
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F. S. Machado, L. Esper, A. Dias, R. Madan, Y. Gu, D. Hildeman, C. N. Serhan, C. L. Karp, and J. Aliberti Native and aspirin-triggered lipoxins control innate immunity by inducing proteasomal degradation of TRAF6 J. Exp. Med., May 12, 2008; 205(5): 1077 - 1086. [Abstract] [Full Text] [PDF] |
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L. V. Pham, H.-J. Zhou, Y.-C. Lin-Lee, A. T. Tamayo, L. C. Yoshimura, L. Fu, B. G. Darnay, and R. J. Ford Nuclear Tumor Necrosis Factor Receptor-associated Factor 6 in Lymphoid Cells Negatively Regulates c-Myb-mediated Transactivation through Small Ubiquitin-related Modifier-1 Modification J. Biol. Chem., February 22, 2008; 283(8): 5081 - 5089. [Abstract] [Full Text] [PDF] |
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S. L. Rowland, M. M. Tremblay, J. M. Ellison, L. L. Stunz, G. A. Bishop, and B. S. Hostager A Novel Mechanism for TNFR-Associated Factor 6-Dependent CD40 Signaling J. Immunol., October 1, 2007; 179(7): 4645 - 4653. [Abstract] [Full Text] [PDF] |
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D. W. Abbott, Y. Yang, J. E. Hutti, S. Madhavarapu, M. A. Kelliher, and L. C. Cantley Coordinated Regulation of Toll-Like Receptor and NOD2 Signaling by K63-Linked Polyubiquitin Chains Mol. Cell. Biol., September 1, 2007; 27(17): 6012 - 6025. [Abstract] [Full Text] [PDF] |
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A. Baguet, S. Degot, N. Cougot, E. Bertrand, M.-P. Chenard, C. Wendling, P. Kessler, H. Le Hir, M.-C. Rio, and C. Tomasetto The exon-junction-complex-component metastatic lymph node 51 functions in stress-granule assembly J. Cell Sci., August 15, 2007; 120(16): 2774 - 2784. [Abstract] [Full Text] [PDF] |
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B. Morriswood, G. Ryzhakov, C. Puri, S. D. Arden, R. Roberts, C. Dendrou, J. Kendrick-Jones, and F. Buss T6BP and NDP52 are myosin VI binding partners with potential roles in cytokine signalling and cell adhesion J. Cell Sci., August 1, 2007; 120(15): 2574 - 2585. [Abstract] [Full Text] [PDF] |
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B. Guo and G. Cheng Modulation of the Interferon Antiviral Response by the TBK1/IKKi Adaptor Protein TANK J. Biol. Chem., April 20, 2007; 282(16): 11817 - 11826. [Abstract] [Full Text] [PDF] |
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M. I. Garcia, J. Kaserman, Y.-H. Chung, J. U. Jung, and S.-H. Lee Herpesvirus Saimiri STP-A Oncoprotein Utilizes Src Family Protein Tyrosine Kinase and Tumor Necrosis Factor Receptor-Associated Factors To Elicit Cellular Signal Transduction J. Virol., March 15, 2007; 81(6): 2663 - 2674. [Abstract] [Full Text] [PDF] |
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J.-K. Min, Y.-L. Cho, J.-H. Choi, Y. Kim, J. H. Kim, Y. S. Yu, J. Rho, N. Mochizuki, Y.-M. Kim, G. T. Oh, et al. Receptor activator of nuclear factor (NF)-{kappa}B ligand (RANKL) increases vascular permeability: impaired permeability and angiogenesis in eNOS-deficient mice Blood, February 15, 2007; 109(4): 1495 - 1502. [Abstract] [Full Text] [PDF] |
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B. Lamothe, A. Besse, A. D. Campos, W. K. Webster, H. Wu, and B. G. Darnay Site-specific Lys-63-linked Tumor Necrosis Factor Receptor-associated Factor 6 Auto-ubiquitination Is a Critical Determinant of I{kappa}B Kinase Activation J. Biol. Chem., February 9, 2007; 282(6): 4102 - 4112. [Abstract] [Full Text] [PDF] |
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J. Q. He, S. K. Saha, J. R. Kang, B. Zarnegar, and G. Cheng Specificity of TRAF3 in Its Negative Regulation of the Noncanonical NF-{kappa}B Pathway J. Biol. Chem., February 9, 2007; 282(6): 3688 - 3694. [Abstract] [Full Text] [PDF] |
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M. A. Garcia, J. Gil, I. Ventoso, S. Guerra, E. Domingo, C. Rivas, and M. Esteban Impact of Protein Kinase PKR in Cell Biology: from Antiviral to Antiproliferative Action Microbiol. Mol. Biol. Rev., December 1, 2006; 70(4): 1032 - 1060. [Abstract] [Full Text] [PDF] |
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Z. S. Nagy, H. Rui, S. M. Stepkowski, J. Karras, and R. A. Kirken A Preferential Role for STAT5, not Constitutively Active STAT3, in Promoting Survival of a Human Lymphoid Tumor J. Immunol., October 15, 2006; 177(8): 5032 - 5040. [Abstract] [Full Text] [PDF] |
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S. M. Miggin and L. A. J. O'Neill New insights into the regulation of TLR signaling J. Leukoc. Biol., August 1, 2006; 80(2): 220 - 226. [Abstract] [Full Text] [PDF] |
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M. A. Jarvis, J. A. Borton, A. M. Keech, J. Wong, W. J. Britt, B. E. Magun, and J. A. Nelson Human Cytomegalovirus Attenuates Interleukin-1{beta} and Tumor Necrosis Factor Alpha Proinflammatory Signaling by Inhibition of NF-{kappa}B Activation. J. Virol., June 1, 2006; 80(11): 5588 - 5598. [Abstract] [Full Text] [PDF] |
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U. K. Misra, R. Deedwania, and S. V. Pizzo Activation and Cross-talk between Akt, NF-{kappa}B, and Unfolded Protein Response Signaling in 1-LN Prostate Cancer Cells Consequent to Ligation of Cell Surface-associated GRP78 J. Biol. Chem., May 12, 2006; 281(19): 13694 - 13707. [Abstract] [Full Text] [PDF] |
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D. Xu, S. Wang, W. Liu, J. Liu, and X. Feng A Novel Receptor Activator of NF-{kappa}B (RANK) Cytoplasmic Motif Plays an Essential Role in Osteoclastogenesis by Committing Macrophages to the Osteoclast Lineage J. Biol. Chem., February 24, 2006; 281(8): 4678 - 4690. [Abstract] [Full Text] [PDF] |
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C. Mauro, E. Crescenzi, R. De Mattia, F. Pacifico, S. Mellone, S. Salzano, C. de Luca, L. D'Adamio, G. Palumbo, S. Formisano, et al. Central Role of the Scaffold Protein Tumor Necrosis Factor Receptor-associated Factor 2 in Regulating Endoplasmic Reticulum Stress-induced Apoptosis J. Biol. Chem., February 3, 2006; 281(5): 2631 - 2638. [Abstract] [Full Text] [PDF] |
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L. Wu, H. Nakano, and Z. Wu The C-terminal Activating Region 2 of the Epstein-Barr Virus-encoded Latent Membrane Protein 1 Activates NF-{kappa}B through TRAF6 and TAK1 J. Biol. Chem., January 27, 2006; 281(4): 2162 - 2169. [Abstract] [Full Text] [PDF] |
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J. Wan, W. Zhang, L. Wu, T. Bai, M. Zhang, K.-w. Lo, Y.-l. Chui, Y. Cui, Q. Tao, M. Yamamoto, et al. BS69, a Specific Adaptor in the Latent Membrane Protein 1-Mediated c-Jun N-Terminal Kinase Pathway Mol. Cell. Biol., January 15, 2006; 26(2): 448 - 456. [Abstract] [Full Text] [PDF] |
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T. O. Nashar and J. R. Drake Dynamics of MHC Class II-Activating Signals in Murine Resting B Cells J. Immunol., January 15, 2006; 176(2): 827 - 838. [Abstract] [Full Text] [PDF] |
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Y. Maezawa, H. Nakajima, K. Suzuki, T. Tamachi, K. Ikeda, J.-i. Inoue, Y. Saito, and I. Iwamoto Involvement of TNF Receptor-Associated Factor 6 in IL-25 Receptor Signaling J. Immunol., January 15, 2006; 176(2): 1013 - 1018. [Abstract] [Full Text] [PDF] |
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J. A.F. Marteijn, L. van Emst, C. A.J. Erpelinck-Verschueren, G. Nikoloski, A. Menke, T. de Witte, B. Lowenberg, J. H. Jansen, and B. A. van der Reijden The E3 ubiquitin-protein ligase Triad1 inhibits clonogenic growth of primary myeloid progenitor cells Blood, December 15, 2005; 106(13): 4114 - 4123. [Abstract] [Full Text] [PDF] |
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C. Rojas-Cartagena, C. B. Appleyard, O. I. Santiago, and I. Flores Experimental Intestinal Endometriosis Is Characterized by Increased Levels of Soluble TNFRSF1B and Downregulation of Tnfrsf1a and Tnfrsf1b Gene Expression Biol Reprod, December 1, 2005; 73(6): 1211 - 1218. [Abstract] [Full Text] [PDF] |
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C. C. Davies, T. W. Mak, L. S. Young, and A. G. Eliopoulos TRAF6 Is Required for TRAF2-Dependent CD40 Signal Transduction in Nonhemopoietic Cells Mol. Cell. Biol., November 15, 2005; 25(22): 9806 - 9819. [Abstract] [Full Text] [PDF] |
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T. Noguchi, K. Takeda, A. Matsuzawa, K. Saegusa, H. Nakano, J. Gohda, J.-i. Inoue, and H. Ichijo Recruitment of Tumor Necrosis Factor Receptor-associated Factor Family Proteins to Apoptosis Signal-regulating Kinase 1 Signalosome Is Essential for Oxidative Stress-induced Cell Death J. Biol. Chem., November 4, 2005; 280(44): 37033 - 37040. [Abstract] [Full Text] [PDF] |
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R. M. Andrade, M. Wessendarp, J.-A. C. Portillo, J.-Q. Yang, F. J. Gomez, J. E. Durbin, G. A. Bishop, and C. S. Subauste TNF Receptor-Associated Factor 6-Dependent CD40 Signaling Primes Macrophages to Acquire Antimicrobial Activity in Response to TNF-{alpha} J. Immunol., November 1, 2005; 175(9): 6014 - 6021. [Abstract] [Full Text] [PDF] |
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A. N. Abell and G. L. Johnson MEKK4 Is an Effector of the Embryonic TRAF4 for JNK Activation J. Biol. Chem., October 28, 2005; 280(43): 35793 - 35796. [Abstract] [Full Text] [PDF] |
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S. Wu, P. Xie, K. Welsh, C. Li, C.-Z. Ni, X. Zhu, J. C. Reed, A. C. Satterthwait, G. A. Bishop, and K. R. Ely LMP1 Protein from the Epstein-Barr Virus Is a Structural CD40 Decoy in B Lymphocytes for Binding to TRAF3 J. Biol. Chem., September 30, 2005; 280(39): 33620 - 33626. [Abstract] [Full Text] [PDF] |
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J.-K. Min, Y.-M. Kim, S. W. Kim, M.-C. Kwon, Y.-Y. Kong, I. K. Hwang, M. H. Won, J. Rho, and Y.-G. Kwon TNF-Related Activation-Induced Cytokine Enhances Leukocyte Adhesiveness: Induction of ICAM-1 and VCAM-1 via TNF Receptor-Associated Factor and Protein Kinase C-Dependent NF-{kappa}B Activation in Endothelial Cells J. Immunol., July 1, 2005; 175(1): 531 - 540. [Abstract] [Full Text] [PDF] |
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S. Das, J. Cho, I. Lambertz, M. A. Kelliher, A. G. Eliopoulos, K. Du, and P. N. Tsichlis Tpl2/Cot Signals Activate ERK, JNK, and NF-{kappa}B in a Cell-type and Stimulus-specific Manner J. Biol. Chem., June 24, 2005; 280(25): 23748 - 23757. [Abstract] [Full Text] [PDF] |
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E. M. Esparza and R. H. Arch Glucocorticoid-Induced TNF Receptor, a Costimulatory Receptor on Naive and Activated T Cells, Uses TNF Receptor-Associated Factor 2 in a Novel Fashion as an Inhibitor of NF-{kappa}B Activation J. Immunol., June 15, 2005; 174(12): 7875 - 7882. [Abstract] [Full Text] [PDF] |
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M.-Y. Kim, G. Anderson, A. White, E. Jenkinson, W. Arlt, I.-L. Martensson, L. Erlandsson, and P. J. L. Lane OX40 Ligand and CD30 Ligand Are Expressed on Adult but Not Neonatal CD4+CD3- Inducer Cells: Evidence That IL-7 Signals Regulate CD30 Ligand but Not OX40 Ligand Expression J. Immunol., June 1, 2005; 174(11): 6686 - 6691. [Abstract] [Full Text] [PDF] |
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F. M. C. Gaspal, M.-Y. Kim, F. M. McConnell, C. Raykundalia, V. Bekiaris, and P. J. L. Lane Mice Deficient in OX40 and CD30 Signals Lack Memory Antibody Responses because of Deficient CD4 T Cell Memory J. Immunol., April 1, 2005; 174(7): 3891 - 3896. [Abstract] [Full Text] [PDF] |
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Z.-P. Xia and Z. J. Chen TRAF2: A Double-Edged Sword? Sci. Signal., February 22, 2005; 2005(272): pe7 - pe7. [Abstract] [Full Text] [PDF] |
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L. Mukundan, G. A. Bishop, K. Z. Head, L. Zhang, L. M. Wahl, and J. Suttles TNF Receptor-Associated Factor 6 Is an Essential Mediator of CD40-Activated Proinflammatory Pathways in Monocytes and Macrophages J. Immunol., January 15, 2005; 174(2): 1081 - 1090. [Abstract] [Full Text] [PDF] |
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J. Zhong and J. M. Kyriakis Germinal Center Kinase Is Required for Optimal Jun N-Terminal Kinase Activation by Toll-Like Receptor Agonists and Is Regulated by the Ubiquitin Proteasome System and Agonist-Induced, TRAF6-Dependent Stabilization Mol. Cell. Biol., October 15, 2004; 24(20): 9165 - 9175. [Abstract] [Full Text] [PDF] |
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M. S. Hayden and S. Ghosh Signaling to NF-{kappa}B Genes & Dev., September 15, 2004; 18(18): 2195 - 2224. [Abstract] [Full Text] [PDF] |
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A. Rivas-Carvalho, M. A. Meraz-Rios, L. Santos-Argumedo, S. Bajana, G. Soldevila, M. E. Moreno-Garcia, and C. Sanchez-Torres CD16+ human monocyte-derived dendritic cells matured with different and unrelated stimuli promote similar allogeneic Th2 responses: regulation by pro- and anti-inflammatory cytokines Int. Immunol., September 1, 2004; 16(9): 1251 - 1263. [Abstract] [Full Text] [PDF] |
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D. A. Murray and I. N. Crispe TNF-{alpha} Controls Intrahepatic T Cell Apoptosis and Peripheral T Cell Numbers J. Immunol., August 15, 2004; 173(4): 2402 - 2409. [Abstract] [Full Text] [PDF] |
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A. S. McKee, F. Dzierszinski, M. Boes, D. S. Roos, and E. J. Pearce Functional Inactivation of Immature Dendritic Cells by the Intracellular Parasite Toxoplasma gondii J. Immunol., August 15, 2004; 173(4): 2632 - 2640. [Abstract] [Full Text] [PDF] |
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A. D. Weinberg, D. E. Evans, C. Thalhofer, T. Shi, and R. A. Prell The generation of T cell memory: a review describing the molecular and cellular events following OX40 (CD134) engagement J. Leukoc. Biol., June 1, 2004; 75(6): 962 - 972. [Abstract] [Full Text] [PDF] |
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J. Gil, M. A. Garcia, P. Gomez-Puertas, S. Guerra, J. Rullas, H. Nakano, J. Alcami, and M. Esteban TRAF Family Proteins Link PKR with NF-{kappa}B Activation Mol. Cell. Biol., May 15, 2004; 24(10): 4502 - 4512. [Abstract] [Full Text] [PDF] |
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L.-G. Xu, L.-Y. Li, and H.-B. Shu TRAF7 Potentiates MEKK3-induced AP1 and CHOP Activation and Induces Apoptosis J. Biol. Chem., April 23, 2004; 279(17): 17278 - 17282. [Abstract] [Full Text] [PDF] |
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J. J. Gentry, N. J. Rutkoski, T. L. Burke, and B. D. Carter A Functional Interaction between the p75 Neurotrophin Receptor Interacting Factors, TRAF6 and NRIF J. Biol. Chem., April 16, 2004; 279(16): 16646 - 16656. [Abstract] [Full Text] [PDF] |
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T. So, S. Salek-Ardakani, H. Nakano, C. F. Ware, and M. Croft TNF Receptor-Associated Factor 5 Limits the Induction of Th2 Immune Responses J. Immunol., April 1, 2004; 172(7): 4292 - 4297. [Abstract] [Full Text] [PDF] |
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J. S. Park, D. Svetkauskaite, Q. He, J.-Y. Kim, D. Strassheim, A. Ishizaka, and E. Abraham Involvement of Toll-like Receptors 2 and 4 in Cellular Activation by High Mobility Group Box 1 Protein J. Biol. Chem., February 27, 2004; 279(9): 7370 - 7377. [Abstract] [Full Text] [PDF] |
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W. Matsuyama, L. Wang, W. L. Farrar, M. Faure, and T. Yoshimura Activation of Discoidin Domain Receptor 1 Isoform b with Collagen Up-Regulates Chemokine Production in Human Macrophages: Role of p38 Mitogen-Activated Protein Kinase and NF-{kappa}B J. Immunol., February 15, 2004; 172(4): 2332 - 2340. [Abstract] [Full Text] [PDF] |
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L. Guillot, S. Medjane, K. Le-Barillec, V. Balloy, C. Danel, M. Chignard, and M. Si-Tahar Response of Human Pulmonary Epithelial Cells to Lipopolysaccharide Involves Toll-like Receptor 4 (TLR4)-dependent Signaling Pathways: EVIDENCE FOR AN INTRACELLULAR COMPARTMENTALIZATION OF TLR4 J. Biol. Chem., January 23, 2004; 279(4): 2712 - 2718. [Abstract] [Full Text] [PDF] |
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J. Wan, L. Sun, J. W. Mendoza, Y. L. Chui, D. P. Huang, Z. J. Chen, N. Suzuki, S. Suzuki, W.-C. Yeh, S. Akira, et al. Elucidation of the c-Jun N-Terminal Kinase Pathway Mediated by Epstein-Barr Virus-Encoded Latent Membrane Protein 1 Mol. Cell. Biol., January 1, 2004; 24(1): 192 - 199. [Abstract] [Full Text] [PDF] |
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C. Li, P. S. Norris, C.-Z. Ni, M. L. Havert, E. M. Chiong, B. R. Tran, E. Cabezas, J. C. Reed, A. C. Satterthwait, C. F. Ware, et al. Structurally Distinct Recognition Motifs in Lymphotoxin-{beta} Receptor and CD40 for Tumor Necrosis Factor Receptor-associated Factor (TRAF)-mediated Signaling J. Biol. Chem., December 12, 2003; 278(50): 50523 - 50529. [Abstract] [Full Text] [PDF] |
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D. Frleta, R. J. Noelle, and W. F. Wade CD40-mediated up-regulation of Toll-like receptor 4-MD2 complex on the surface of murine dendritic cells J. Leukoc. Biol., December 1, 2003; 74(6): 1064 - 1073. [Abstract] [Full Text] |
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K. J. Savage, S. Monti, J. L. Kutok, G. Cattoretti, D. Neuberg, L. de Leval, P. Kurtin, P. D. Cin, C. Ladd, F. Feuerhake, et al. The molecular signature of mediastinal large B-cell lymphoma differs from that of other diffuse large B-cell lymphomas and shares features with classical Hodgkin lymphoma Blood, December 1, 2003; 102(12): 3871 - 3879. [Abstract] [Full Text] [PDF] |
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S. Akira Toll-like Receptor Signaling J. Biol. Chem., October 3, 2003; 278(40): 38105 - 38108. [Full Text] [PDF] |
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W. Matsuyama, M. Faure, and T. Yoshimura Activation of Discoidin Domain Receptor 1 Facilitates the Maturation of Human Monocyte-Derived Dendritic Cells Through the TNF Receptor Associated Factor 6/TGF-{beta}-Activated Protein Kinase 1 Binding Protein 1{beta}/p38{alpha} Mitogen-Activated Protein Kinase Signaling Cascade J. Immunol., October 1, 2003; 171(7): 3520 - 3532. [Abstract] [Full Text] [PDF] |
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J. K. Sax and W. S. El-Deiry Identification and Characterization of the Cytoplasmic Protein TRAF4 as a p53-regulated Proapoptotic Gene J. Biol. Chem., September 19, 2003; 278(38): 36435 - 36444. [Abstract] [Full Text] [PDF] |
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T. C. Polek, M. Talpaz, B. G. Darnay, and T. Spivak-Kroizman TWEAK Mediates Signal Transduction and Differentiation of RAW264.7 Cells in the Absence of Fn14/TweakR: EVIDENCE FOR A SECOND TWEAK RECEPTOR J. Biol. Chem., August 22, 2003; 278(34): 32317 - 32323. [Abstract] [Full Text] [PDF] |
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F. Henkler, B. Baumann, M. Fotin-Mleczek, M. Weingartner, R. Schwenzer, N. Peters, A. Graness, T. Wirth, P. Scheurich, J. A. Schmid, et al. Caspase-mediated Cleavage Converts the Tumor Necrosis Factor (TNF) Receptor-associated Factor (TRAF)-1 from a Selective Modulator of TNF Receptor Signaling to a General Inhibitor of NF-{kappa}B Activation J. Biol. Chem., August 1, 2003; 278(31): 29216 - 29230. [Abstract] [Full Text] [PDF] |
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J. C. Reed, K. Doctor, A. Rojas, J. M. Zapata, C. Stehlik, L. Fiorentino, J. Damiano, W. Roth, S.-i. Matsuzawa, R. Newman, et al. Comparative Analysis of Apoptosis and Inflammation Genes of Mice and Humans Genome Res., June 1, 2003; 13(6): 1376 - 1388. [Abstract] [Full Text] [PDF] |
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P. J. Donohue, C. M. Richards, S. A.N. Brown, H. N. Hanscom, J. Buschman, S. Thangada, T. Hla, M. S. Williams, and J. A. Winkles TWEAK Is an Endothelial Cell Growth and Chemotactic Factor That Also Potentiates FGF-2 and VEGF-A Mitogenic Activity Arterioscler. Thromb. Vasc. Biol., April 1, 2003; 23(4): 594 - 600. [Abstract] [Full Text] [PDF] |
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L. P. Norman, W. Jiang, X. Han, T. L. Saunders, and J. S. Bond Targeted Disruption of the Meprin {beta} Gene in Mice Leads to Underrepresentation of Knockout Mice and Changes in Renal Gene Expression Profiles Mol. Cell. Biol., February 15, 2003; 23(4): 1221 - 1230. [Abstract] [Full Text] [PDF] |
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A. G. Eliopoulos, E. R. Waites, S. M. S. Blake, C. Davies, P. Murray, and L. S. Young TRAF1 Is a Critical Regulator of JNK Signaling by the TRAF-Binding Domain of the Epstein-Barr Virus-Encoded Latent Infection Membrane Protein 1 but Not CD40 J. Virol., December 20, 2002; 77(2): 1316 - 1328. [Abstract] [Full Text] [PDF] |
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