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Fig. 3. Levels of transcription and acetylated-histone H3 on HAC or integrated sites. (A) RT-PCR analysis of the transformed cell lines (S026, S013 and K031) was performed as described in Fig. 1D. The schematic map of 7C5-SV/CMV BAC indicates PCR probe sites. The primers used are, from top: ß-actin, bsr, bsr-pA, right junction, left junction, kanR, ßgeo-pA, ßgeo1. (B) ChIP and real-time PCR analysis of alphoid BAC using antibody against acetylated histone H3 and normal IgG (as a control). Recovery rate of immunoprecipitated DNA against the input DNA is shown in the histogram, error bars give the s.e.m. (n=3). As controls, an endogenous promoter region of the CENP-B gene (PCENP-B) and the pericentromeric satellite 2 repeat loci (sat2) were used.