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First published online December 17, 2008
doi: 10.1242/10.1242/jcs.037135
Commentary |
Department of Medical Biochemistry and Biophysics, Umeå University, S-90187 Umeå, Sweden
* Author for correspondence (e-mail: sven.carlsson{at}medkem.umu.se)
| Summary |
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Key words: SNX9, Dynamin, N-WASP, Clathrin, Endocytosis, Membrane remodeling
| Introduction |
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Endocytosis is the collective designation of various processes that mediate the uptake of fluid, molecules and particles from the exterior of the cell. Common to these processes is the formation of a curved membrane, which yields a lipid-bilayer envelope around the engulfed matter. The geometry and composition of such envelopes are carefully controlled to allow for their proper transport to the cell interior. If the enveloped structures are sufficiently small (with a diameter of less than 200 nm or so), they are called vesicles, and these can be spherical or can have elongated tubular structures (Fig. 1). Once inside the cell, the vesicles meet and fuse with an elaborate system of membranous structures that are known as endosomes, where the endocytosed cargo is sorted and delivered to the appropriate destination.
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The complex interplay between the plasma membrane and the actin cytoskeleton requires numerous regulatory proteins and is indispensable in many cellular processes (Doherty and McMahon, 2008
). Although the precise role of the actin cytoskeleton in CME in mammalian cells is not understood, it is evident that invagination of the plasma membrane has to influence and involve the actin cytoskeleton. It has been shown that actin polymerization occurs in a temporally regulated manner at cortical sites at which clathrin-coated pits are formed (Merrifield et al., 2002
). The timing of actin bursts is indicative of a role in the inward movement and scission of vesicles. A driving force from actin polymerization that is coordinated with the molecular scission machinery might be necessary for endocytic release of vesicles [for reviews on the role of actin in endocytosis, see the following articles (Engqvist-Goldstein and Drubin, 2003
; Perrais and Merrifield, 2005
; Upadhyaya and van Oudenaarden, 2003
)]. Several factors have the potential to function as links between endocytic-vesicle formation and activation of the actin-polymerizing system, and recently SNX9 has been added to this list of multi-functional proteins as one of the prime candidates for communication between dynamin-dependent membrane scission and actin dynamics.
In this Commentary, we discuss the structure of SNX9 and the functions of its constituent domains, and describe how SNX9 is thought to function in membrane remodeling during endocytosis. We describe the proposed interplay between SNX9 and dynamin at the neck of endocytic vesicles, as well as the role of SNX9 in coupling vesicle formation and actin remodeling. Finally, we discuss potential mechanisms of SNX9 regulation and outline a model of its function in CME.
| The SNX9-family proteins |
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The three proteins of the SNX9 family have the same domain organization, which consists of an SH3 domain at the N-terminus and a PX-BAR unit at the C-terminus (Fig. 2). The region that differs the most between the three proteins lies between the SH3 domain and the PX domain. This sequence, which is predicted to be mostly without ordered secondary structure, is termed the low-complexity domain (LC domain), and has been found to harbor several sequence motifs for interprotein interactions (Lundmark and Carlsson, 2003
; Lundmark and Carlsson, 2004
; Shin et al., 2008
). SNX9, SNX18 and SNX33 localize differently in cells and appear to function in different trafficking pathways (Håberg et al., 2008
). It is therefore believed that the LC domain confers functional specificity on the three proteins. Whereas SNX9 localizes to plasma-membrane endocytic sites, SNX18 is found on peripheral endosomal structures. The LC domain of SNX18 contains a binding motif for AP-1, which is another adaptor protein that is known to associate with clathrin. Our findings indicate, however, that SNX18 functions in an endosomal trafficking pathway that does not rely on clathrin, but that is dependent on AP-1 and the retrograde-trafficking protein PACS1 (Håberg et al., 2008
). Very little is known about the cellular function of the third member, SNX33.
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| SNX9 structure and the mechanism of membrane remodeling |
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PX domains are known to be phosphoinositide-binding units [for reviews on PX domains and phosphoinositides, see the following articles (Di Paolo and De Camilli, 2006
; Lemmon, 2008
; Seet and Hong, 2006
)]. Our early studies on the phosphoinositide specificity of the SNX9 PX domain indicated that it is rather promiscuous in its phosphoinositide binding compared with other PX domains (Lundmark and Carlsson, 2003
), and this result was subsequently confirmed by others (Shin et al., 2008
; Yarar et al., 2008
). The structure of SNX9 PX-BAR gives a logical explanation for this lack of strict specificity, as it was found that the canonical phosphoinositide-binding pocket is wider than usual and can therefore be anticipated to accommodate various phosphoinositide species (Pylypenko et al., 2007
). Under stringent assay conditions, however, a slight preference for phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] is observed. This fits with the proposed role of SNX9 at PtdIns(4,5)P2-enriched sites at the plasma membrane (Lundmark and Carlsson, 2003
), but it is possible that SNX9 can also take part in processes that are linked to the production of other phosphoinositides (Badour et al., 2007
). Unlike other PX-domain structures, the PX domain of SNX9 has a unique extra
-helix that is located at the edge of the yoke-PX-BAR unit (PX
-helix 4 in Fig. 3A). This
-helix, which is highly conserved among species and is also present in SNX18 and SNX33, was found to create a second basic crevice on the membrane-interacting surface of SNX9, into which negatively charged lipids could bind. Mutations of positive amino acids in this
-helix gave a striking decrease in membrane-binding affinity (Pylypenko et al., 2007
). Interestingly, mutations of amino acids in the canonical phosphoinositide-binding site abolished the binding to phosphatidylinositol 3-phosphate [PtdIns(3)P] but only weakened the binding to PtdIns(4,5)P2, a result that opens up the possibility that the second site has specificity for PtdIns(4,5)P2. Further structural studies are required to fully decipher the phosphoinositide-binding properties of SNX9.
In pure protein-liposome assays, the yoke-PX-BAR structural unit has a high capacity to modulate spherical liposomes into long, uniform lipid tubules with a diameter of 20 nm, as detected by negative stain in electron microscopy (Pylypenko et al., 2007
). We found that a sequence just upstream of the determined structure was necessary for this activity (Pylypenko et al., 2007
). This sequence, which is likely to be flexible and therefore invisible in the crystal structure, was suggested to form an amphipathic helix when contacting the membrane. Partial membrane insertion by this helix might be needed to displace membrane lipids for the generation of highly curved membrane. In Fig. 2, we have extended the yoke domain to include the sequence of the proposed amphipathic helix, as it clearly belongs to the functional membrane-sculpting unit.
The mechanism for membrane remodeling by SNX9 has not yet been fully elucidated. As discussed above, it is clear from mutagenesis studies that certain structural features in the yoke-PX-BAR unit are important for tubulation activity (Pylypenko et al., 2007
). Tight binding to the membrane, which is mediated by large patches of positively charged amino acids on the concave surface (including two or more phosphoinositide-binding sites), probably triggers the insertion of the amphipathic helix and the formation of higher-order structures of the protein on the membrane surface. It has been demonstrated that membrane binding stimulates the formation of oligomers of SNX9 (Yarar et al., 2008
). Interestingly, we have observed that membrane-induced SNX9 oligomers require an intact PX
-helix 4, which thereby would have a dual role in SNX9 (our unpublished results). We speculate that SNX9 oligomerizes on the membrane surface through lateral contacts, which are at least partially mediated by PX
-helix 4, to form spirals that will drive tube formation. A spiral arrangement would explain why 20-nm tubes can be stabilized by the concave surface of SNX9 despite the fact that its curvature is shallower (Pylypenko et al., 2007
). The proposed mechanism is similar to the recently described arrangement of F-BAR domains required to propagate membrane tubulation (Frost et al., 2008
).
Recently, the structure of the SNX9 PX-BAR domain was confirmed in an independent study (Wang et al., 2008
) (the crystallized protein did not, however, include the complete yoke domain). An alternative mechanism of membrane tubulation was proposed from structural models based on small-angle X-ray-scattering data (Wang et al., 2008
). According to these models, the dimerized BAR domains can adopt two different conformations that yield different domain curvatures that would drive membrane re-shaping. Such a phenomenon has not been previously found for any BAR-containing protein and, given the large contact area between the BAR-domains, it is not clear how a transition between the conformations can be accomplished.
| The interplay between SNX9 and dynamin |
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The interplay between SNX9 and dynamin does not end with their recruitment to clathrin-coated pits. It is well known that the GTPase activity of dynamin is important for the scission reaction [for reviews on various aspects on dynamin action, see the following articles (Conner and Schmid, 2003
; Hinshaw, 2000
; Kruchten and McNiven, 2006
; Orth and McNiven, 2003
; Praefcke and McMahon, 2004
)]. It has been shown that SNX9 has a profound effect on the GTPase activity of dynamin, especially in the presence of PtdIns(4,5)P2-containing liposomes (Soulet et al., 2005
). This result was interpreted to mean that SNX9 potentiates the assembly-stimulated activity of dynamin on the membrane surface. Full-length SNX9 was required for this effect, which indicates that membrane remodeling mediated by the yoke-PX-BAR unit of SNX9 is involved in activation of dynamin. These results were corroborated by the finding that mutations in either the PX domain or the BAR domain of SNX9 affected the GTPase-stimulatory activity (Yarar et al., 2008
). Recent studies using spectroscopy of fluorescently labeled dynamin showed that the protein acts by partial insertion into the bilayer of highly curved, PtdIns(4,5)P2-dense membranes (Ramachandran and Schmid, 2008
). The hydrolysis of GTP elicits a conformational change that favors dynamin dissociation and destabilization of the membrane. Addition of SNX9 was found to stabilize the association of dynamin with the membrane during stimulated GTP hydrolysis, which would further destabilize the membrane structure. Interestingly, amphiphysin (a brain-enriched protein that shares many properties with SNX9) was found to have the opposite effect (Ramachandran and Schmid, 2008
) and was previously shown to inhibit dynamin assembly (Owen et al., 1998
). This might mean that SNX9 and amphiphysin operate differently in uptake processes.
| SNX9 and actin remodeling |
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Microbes are known to secrete toxins that affect elementary processes in target cells. Notably, SNX9 was found to bind to the Escherichia coli exotoxin EspF and to colocalize with this protein in enteropathogenic E. coli (EPEC)-infected cells (Marches et al., 2006
). As described above, this interaction was shown to require the SH3 domain of SNX9 and high-affinity proline-rich motifs in EspF (Alto et al., 2007
; Marches et al., 2006
). In addition, EspF targets N-WASP through additional binding sites, near the proline-rich motifs, that promote N-WASP-mediated actin polymerization. Overexpression of EspF together with SNX9 in cells resulted in numerous short tubular structures that co-stained with actin (Alto et al., 2007
). It seems, therefore, that the bacterium uses EspF to couple the actin-polymerization ability of N-WASP to the efficient membrane-remodeling activity of SNX9. As the SNX9 SH3 domain is occupied by EspF and SNX9 therefore cannot bind to dynamin, regulated fission is inhibited and instead longer pleiomorphic structures are generated, as was shown by electron microscopy (Alto et al., 2007
). Although the benefit and precise use of this bacterial cellular strategy is not known, it is striking that EspF so specifically targets SNX9. These data further reinforce the role of SNX9 in actin dynamics.
| The regulation of SNX9 in the cellular context |
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- and β2-appendages of AP-2 (Lundmark and Carlsson, 2002| Conclusions and perspectives |
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The uptake of transferrin (which occurs through CME) can be blocked by overexpression of the SNX9 SH3 domain, whereas expression of the full-length protein or a protein that lacks the SH3 domain does not affect this process. Depletion of SNX9 in cells results in a reduction in membrane-targeted dynamin 2 (Lundmark and Carlsson, 2004
) and endocytosed transferrin (Soulet et al., 2005
) (and our unpublished results). However, similar to other proteins that are involved in the formation of clathrin-coated vesicles (such as epsin and AP-180), depletion of SNX9 from cells results in a relatively modest reduction in transferrin uptake (Huang et al., 2004
; Soulet et al., 2005
). This is probably because of redundancy in the molecular mechanism, and highlights the importance of the CME process.
Our knowledge of the functional importance of SNX9 would greatly benefit from in vivo experiments in animals, but so far no data have been presented in a vertebrate model organism in which SNX9 has been depleted. As SNX9 is ubiquitously expressed, it is certainly required for basic processes that are fundamental to different cell types, but it might also have specialized functions. It has been suggested that SNX9, together with dynamin 1 and N-WASP, has a role in synaptic-vesicle endocytosis (Shin et al., 2007
). How this uptake relates to the different mechanisms of synaptic vesicular retrieval, and to the role of amphiphysin (see above), remains to be seen. It is also not known whether SNX9 is important for the CME of any particular cargo, or whether its activity is a general prerequisite for vesicular release in different processes, as has been suggested for dynamin (Praefcke and McMahon, 2004
). Indeed, it has been proposed that SNX9 is not limited to CME but also takes part in fluid-phase uptake, together with dynamin and N-WASP (Yarar et al., 2007
). Altogether, the importance of SNX9 is clearly manifested by its role in the fundamental process of endocytosis, and future studies are likely to underscore its significance.
| Footnotes |
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