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First published online February 18, 2009
doi: 10.1242/10.1242/jcs.037622
Commentary |
Department of Molecular and Cellular Biology, University of California, Davis, CA 95616, USA
e-mail: dastarr{at}ucdavis.edu
| Summary |
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Key words: KASH, SUN, Bouquet, Nuclear anchorage, Nuclear envelope, Nuclear positioning
| Introduction |
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Another example of nuclear migration in development is the interkinetic nuclear migration in the pseudostratified neural epithelium, first described by Sauer (Sauer, 1935
). These cells remain attached to both the apical and basal surface of the tissue, but the nucleus migrates from the apical surface to the basal surface and back to the apical surface, where it divides (Fig. 1D) (reviewed by Baye and Link, 2008
). The apical division helps regulate development; differentiated cells may leave the neuroepithelium after the apical division (Del Bene et al., 2008
). Finally, in the specialized syncytia of the mammalian skeletal-muscle myotube, hundreds of nuclei are evenly spaced at the periphery of the cell and a few transcriptionally specialized nuclei cluster under the neuromuscular junction (Fig. 1E) (Bruusgaard et al., 2003
).
Depending on the cell type, all three components of the cytoskeleton (microtubules, actin filaments and intermediate filaments) can function either alone or together to position nuclei. Two common threads underlie the mechanisms of nuclear positioning. First, the nucleus must communicate with the cytoskeleton. Second, forces that are generated in the cytoplasm must be transferred across the nuclear envelope to the nuclear matrix, which is the structural element of the nucleus. Because of the fluid properties of membranes, it is thought that, if a molecular machine were to simply pull on the outer nuclear membrane (ONM) without connecting to the inner nuclear membrane (INM), the machine would simply pull an endoplasmic-reticulum (ER) tubule away from the nuclear envelope. It has recently become apparent that the bridges that are used to transfer forces from the cytoskeleton across the nuclear envelope to position nuclei are the same as those that are used to move meiotic chromosomes and organize chromatin. The mechanisms of these force-transferring bridges are the focus of this Commentary.
To understand how forces are transferred across the nuclear envelope, two fundamental cell-biological questions must be addressed. How are proteins targeted specifically to the ONM and not the contiguous ER? And how is force transferred across the two membranes of the nuclear envelope from the cytoskeleton to the nuclear matrix? The answers involve the KASH (Klarsicht, ANC-1, Syne homology) and SUN (Sad1 and UNC-84) proteins, which form a bridge across the two membranes of the nuclear envelope, directly linking the cytoplasm to the nuclear lamina. In this Commentary, the current model of the targeting of proteins specifically to the ONM and how a bridge across the nuclear envelope is built to transfer forces between the cytoplasm and nucleoplasm will be discussed. The proposed mechanisms of how ONM proteins interact with the cytoskeleton and how the INM interacts with the lamina and chromosomes will also be summarized. Finally, the recent literature as to how these mechanisms might be involved in human disease is reviewed.
| Systems in which to study nuclear migration and anchorage |
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As seen in both a wound-healing polarization assay in fibroblasts and a neuronal-precursor migration system (Gomes et al., 2005
; Tsai et al., 2007
), nuclear migration depends on both microtubule and actin dynamics, although to different extents (Fig. 2). When NIH-3T3 fibroblasts are starved and wounded, bordering cells will polarize, but not migrate, after the addition of the growth factor lysophosphatidic acid (LPA). The newly polarized cells have their centrosomes facing the wound and their nuclei behind the centrosomes. A time-lapse microscopy study demonstrated that the centrosomes remain anchored in the middle of the cell while the nucleus actively migrates behind the centrosomes (Gomes et al., 2005
) (Fig. 2A). This rearward nuclear movement is an active process, as actin, myosin and the small G-protein Cdc42 are required and nuclear movement is coupled with retrograde actin flow (Gomes et al., 2005
).
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| The nuclear-envelope bridging model |
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In the current model, KASH proteins are recruited to the ONM by interacting with the INM SUN proteins in the perinuclear space (Figs 3, 4). As a result, KASH and SUN proteins bridge the nuclear envelope to connect the cytoskeleton to nuclear structural elements (Crisp et al., 2006
; McGee et al., 2006
; Padmakumar et al., 2005
). Force that is transferred across the nuclear envelope must be distributed in the lamina or chromatin. In Schizosaccharomyces pombe, one possible mechanism for this dispersion is via Ima1, which links chromatin to the INM close to where the Kms2-Sad1 KASH-SUN complex transfers forces from the spindle pole body (SPB), across the nuclear envelope, through kinetochores to centromeres. King et al. (King et al., 2008
) suggest that, if the KASH-SUN bridge is acting as the bolt, Ima1 and associated chromatin act as the nut to distribute the forces along the inside of the INM (Fig. 4D). Ima1 homologs (e.g. NET5) (Schirmer et al., 2003
) or lamin itself might play a similar role for the KASH-SUN bridge in higher organisms.
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| SUN proteins at the INM |
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175-residue C-terminal domain that is homologous with the C-terminus of the S. pombe protein Sad1 (Hagan and Yanmagida, 1995
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The relationships between SUN proteins from different species are not clear. For example, the SUN domain of UNC-84 is closest to human Sun1 in sequence, but it is almost as closely related to human Sun2. Furthermore, the SUN domain of C. elegans SUN-1 is equally related to all four mammalian SUN proteins [for a detailed genomic analysis, see the supplementary data figure S2 of Jaspersen et al. (Jaspersen et al., 2006
)]. The nucleoplasmic N-termini of SUN proteins are not obviously conserved. Some SUN proteins are dependent on nuclear lamins for localization (Lee et al., 2002
), whereas others are not (Haque et al., 2006
; Fridkin et al., 2004
). Higher organisms have multiple SUN proteins, which are expressed in a tissue-specific manner (Crisp et al., 2006
; Ding et al., 2007
; Hodzic et al., 2004
; Kracklauer et al., 2007
; Malone et al., 2003
; Padmakumar et al., 2005
). For example, in C. elegans, SUN-1 (also known as matefin) is expressed in the germ line and early embryo, whereas UNC-84 is expressed in most somatic cells from the 24-cell-stage embryo through to adulthood (Fridkin et al., 2004
; Lee et al., 2002
).
The precise topologies and mechanism(s) of targeting SUN proteins to the INM remain to be elucidated. Current genetic and biochemical evidence suggests that SUN proteins form dimers or multimers. Consistent with this model, most SUN proteins have short coiled-coil domains in their perinuclear-space domains (Crisp et al., 2006
; Haque et al., 2006
; Malone et al., 1999
). The coiled-coil domains of human Sun1 form immobile oligomeric complexes through disulfide bonds (Lu et al., 2008
).
SUN proteins have been implicated in a wide variety of important cellular functions (Table 1; Figs 3, 4). For example, C. elegans UNC-84 and S. pombe Sad1 function in nuclear positioning (Malone et al., 1999
; Tran et al., 2001
), whereas SUN proteins in budding and fission yeast play essential roles in SPB duplication and spindle architecture, respectively (Hagan and Yanmagida, 1995
; Jaspersen et al., 2006
). SUN-1 in C. elegans recruits CED-4 to the nuclear envelope during apoptosis (Tzur et al., 2006a
) and is required for centrosome attachment to the nucleus, as is Klaroid in Drosophila (Fig. 3B) (Kracklauer et al., 2007
; Malone et al., 2003
). SUN proteins in humans and Dictyostelium discoideum function to maintain the even spacing between the INM and ONM (Crisp et al., 2006
; Xiong et al., 2008
). Finally, SUN proteins are required in a number of systems to attach telomeres or pairing centers to the nuclear envelope during meiosis (Fig. 4) (Chikashige et al., 2006
; Conrad et al., 2008
; Ding et al., 2007
; Koszul et al., 2008
; Penkner et al., 2007
).
How can SUN proteins be involved in so many different cellular functions? The current model (Figs 3, 4) is that SUN proteins function at the INM to recruit KASH proteins to the ONM, forming a bridge across the nuclear envelope. Then, a number of different KASH proteins that are positioned in the ONM and extend into the cytoplasm can function in a variety of cellular processes. A single SUN protein can interact with multiple KASH proteins. For example, UNC-84 interacts with ANC-1 to anchor nuclei to the actin cytoskeleton and then with UNC-83 during nuclear migration (McGee et al., 2006
; Starr and Han, 2002
; Starr et al., 2001
). Many cells have both UNC-83 and ANC-1 on their nuclear envelope at the same time, so the SUN protein must be able to regulate its interactions with different KASH domains. The AAA+ (ATPases associated with diverse cellular activities) ATPase torsinA has recently been shown to bind to KASH domains and regulate their localization to the nuclear envelope (Nery et al., 2008
). Thus, torsinA is a leading candidate to regulate SUN proteins as they switch their interactions between different KASH proteins. Furthermore, different SUN proteins are likely to interact with different partners in the nucleoplasm.
| KASH proteins at the ONM |
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To fit the definition of a KASH protein (Table 1) (reviewed by Starr and Fischer, 2005
; Wilhelmsen et al., 2006
), a protein should meet four criteria. First, KASH proteins have a domain at their C-termini that consists of a single transmembrane domain that is followed by fewer than 35 residues before the C-terminus. Thus, KASH proteins are C-tail-anchored integral membrane proteins that are inserted into membranes post-translationally (see Box 1). The level of similarity between KASH domains may be very weak, suggesting that many KASH proteins remain to be found. For example, the C-terminus of C. elegans ZYG-12 poorly aligns with other KASH domains, and S. cerevisiae Csm4 has no sequence similarity to other known KASH domains, but these two KASH proteins meet all the other criteria listed here (Conrad et al., 2008
; Koszul et al., 2008
; Starr and Fischer, 2005
). Second, KASH proteins localize specifically to the ONM with the small C-terminus in the perinuclear space and the large divergent N-terminal domain extending into the cytoplasm. KASH domains are both necessary and sufficient to localize KASH proteins to the ONM (Fischer et al., 2004
; Grady et al., 2005
; Guo et al., 2005
; McGee et al., 2006
; Starr and Han, 2002
; Zhang et al., 2001
; Zhang et al., 2007b
). To date, only KASH proteins have been shown to localize exclusively to the ONM and not to the contiguous ER membrane. KASH proteins often exist in many isoforms, some of which are KASH-less and function at locations away from the ONM (Guo et al., 2005
; Zhang et al., 2002
; Zhang et al., 2001
). Third, KASH proteins require SUN proteins for localization to the nuclear envelope (Crisp et al., 2006
; Padmakumar et al., 2005
; Starr and Han, 2002
; Starr et al., 2001
). KASH domains directly interact with SUN proteins, through both the SUN domain and a less-conserved domain, in the perinuclear space (Crisp et al., 2006
; Haque et al., 2006
; McGee et al., 2006
; Padmakumar et al., 2005
). How the two KASH-interacting domains of SUN proteins function to bind to KASH peptides will require detailed structural studies. Fourth, The N-terminal domains of KASH proteins are not conserved, but do interact with a variety of components of the cytoskeleton to mediate multiple cellular processes (Fig. 3).
| Box 1. Targeting KASH and other C-tail-anchored proteins to membranes
Tail-anchored proteins contain cytosolic N-termini and a single transmembrane domain very close to their C-termini. SNAREs, components of the Sec61 translocon, apoptosis regulators of the Bcl family, the TOM complex for mitochondrial import, cytochrome b5 and KASH proteins are examples of tail-anchored proteins (reviewed by Borgese et al., 2007
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| Mechanisms of nuclear positioning |
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-helical (reviewed by Starr and Fischer, 2005
C. elegans ANC-1 and its mammalian orthologs Syne-1 and Syne-2 are giant proteins of nearly a megadalton that consist of an N-terminal actin-binding domain, a large rope-like domain of mostly divergent spectrin repeats and a C-terminal KASH domain. ANC-1 and Syne proteins are thought to function to directly tether the ONM to the actin cytoskeleton (Fig. 3A) (Padmakumar et al., 2004
; Starr and Han, 2002
; Zhang et al., 2002
; Zhen et al., 2002
). Some data suggest that shorter isoforms of Syne proteins, some KASH-less, exist that may localize to the INM and possibly contribute to nuclear positioning (Warren et al., 2005
). Loss-of-function mutations in ANC-1 or Syne-1 lead to unanchored nuclei, which form large clumps in syncytial cells (Starr, 2007
; Starr and Han, 2002
; Zhang et al., 2007b
). This nuclear-anchorage defect can also be phenocopied by a dominant-negative approach in which overexpression of the KASH domain of ANC-1 or Syne-1 displaces endogenous KASH proteins from the nuclear envelope (Grady et al., 2005
; Starr and Han, 2002
). Both an analogous dominant-negative construct and a morpholino against syne2 have been used to show that zebrafish KASH proteins are involved in nuclear migration in the developing retina (Tsujikawa et al., 2007
; Del Bene et al., 2008
).
Syne-1, Syne-2 and ANC-1 have similar domains and lengths to dystrophin. The KASH domain of ANC-1 and of the Syne proteins allows them and their SUN partners to bridge the double membrane of the nuclear envelope, whereas dystrophin and its partners only transfer forces across a single plasma membrane (Starr and Han, 2003
). The Syne proteins also are involved in mediating the stiffness of the global cytoskeleton. Tissue-culture cells that overexpress the dominant-negative construct show a decrease in mechanical stiffness, even far from the nucleus (Stewart-Hutchinson et al., 2008
). These data lead to an interesting hypothesis that Syne proteins, the actin network and the nuclear-envelope bridge might directly transmit mechanical stimuli from the plasma membrane to the chromatin, thereby affecting the transcription of certain genes (Gieni and Hendzel, 2008
).
KASH proteins also mediate nuclear migration through both centrosome-dependent and centrosome-independent mechanisms. Drosophila Klarsicht functions during nuclear migration in pseudostratified developing photoreceptor cells to attach the nucleus to centrosomes (Fig. 3B). In klarsicht or klaroid mutants, the centrosome migrates normally to the apical surface of the eye disc immediately after the morphogenic front passes, but nuclei fail to attach to the centrosome and remain basal (Kracklauer et al., 2007
; Patterson et al., 2004
). Klarsicht is thought to function through dynein (Gross et al., 2000
; Welte et al., 1998
), and mutations in the dynein regulators dynactin, Bic-D and LIS1 also disrupt nuclear migration (Swan et al., 1999
; Whited et al., 2004
). However, the exact mechanism of how Klarsicht interacts with dynein is unknown.
C. elegans ZYG-12 functions during pronuclear migration to attach centrosomes to nuclei (Fig. 3B). In zyg-12 or sun-1 mutant embryos, both centrosomes detach from the nucleus and pronuclear migration fails, leading to lethality (Malone et al., 2003
). ZYG-12 on the ONM is thought to bind to isoforms of ZYG-12 that lack the KASH domain and bind to the centrosome (Malone et al., 2003
). ZYG-12 also interacts with the dynein light chain, suggesting that dynein attaches centrosomes to the nuclear envelope (Malone et al., 2003
). Nuclear migration events that occur later in C. elegans development apparently occur by a centrosome-attachment-independent manner (Fig. 3C). Mutations in unc-83 or unc-84 disrupt nuclear migration in a variety of tissues, but the centrosomes remain attached to mis-positioned nuclei (Lee et al., 2002
; Starr et al., 2001
). The exact mechanism of how the KASH protein UNC-83 interacts with the cytoskeleton, and whether the centrosome plays a role, are open questions.
The mammalian KASH protein Nesprin-3 links nuclei to intermediate filaments through plectin (Fig. 3D) (Ketema et al., 2007
; Wilhelmsen et al., 2005
). The cellular function of connecting the ONM to intermediate filaments by Nesprin-3 remains to be determined, although intermediate filaments have been implicated in nuclear positioning. Mice with knockout alleles of desmin, the major skeletal-muscle component of intermediate filaments, have a striking nuclear-anchorage defect (Ralston et al., 2006
). In addition, the intermediate-filament vimentin is often found closely associated with nuclei, and mutations in vimentin lead to defects in nuclear morphology (Toivola et al., 2005
).
| Moving chromosomes within the nucleus |
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KASH and SUN proteins were implicated in chromosome movement when Chikashige et al. (Chikashige et al., 2006
) identified Bqt1 and Bqt2 in fission yeast and showed that these meiotic-specific proteins connect telomeres to Sad1 on the nucleoplasmic face of the INM (Fig. 4A). The foci of Sad1-associated telomeres move towards the SPB in a microtubule-dependent manner and probably function through Kms1 (Chikashige et al., 2006
). Kms1 fits the criteria of a KASH protein – it has a homologous KASH domain and its interaction with Sad1 is required for localization to the nuclear envelope (Miki et al., 2004
). The cytoplasmic domain of Kms1 interacts with dynein components (Miki et al., 2004
). Thus, Kms1 and Sad1 have been proposed to form a bridge that transfers forces that are generated by dynein along microtubules in the cytoplasm to telomeres in the nucleus (Chikashige et al., 2006
).
Subsequently, SUN proteins have been shown to localize telomeres (or pairing centers in C. elegans) to the nuclear periphery during meiosis in budding yeast, C. elegans and mice (Bhalla and Dernburg, 2008
; Bupp et al., 2007
; Conrad et al., 2007
; Ding et al., 2007
; Penkner et al., 2007
). In contrast to fission yeast, telomere movements in budding yeast are dependent on actin dynamics (Koszul et al., 2008
). No KASH protein has been implicated to work with the SUN protein Mps3 in budding yeast, but Csm4 fits the criteria of a KASH protein. Csm4 localizes to the nuclear envelope (although it is not known whether it localizes to the ONM) in an Mps3-dependent manner (Conrad et al., 2008
; Koszul et al., 2008
). It is a tail-anchored protein, but the C-terminus contains no homology to other KASH domains. On the basis of these criteria, Csm4 is the first KASH protein to be identified in budding yeast and it can be hypothesized that its cytoplasmic domain is likely to interact with a component of the actin cytoskeleton (Fig. 4B). In C. elegans, HIM-8 and the ZIM proteins bind to pairing centers of each chromosome and then localize to SUN-1 and ZYG-12 foci at the nuclear envelope of meiotic prophase nuclei (Bhalla and Dernburg, 2008
; Penkner et al., 2007
; Phillips et al., 2005
). Thus, ZYG-12 and SUN-1 transfer forces that are generated by dynein on microtubules to chromosomes within the nucleus (Fig. 4C). The cytoskeletal components that are used to move mouse telomeres along the INM through Sun1 remain to be identified. Mouse Sun2 is also associated with telomeres at the INM of meiotic cells, but its functional role is unknown (Schmitt et al., 2007
).
KASH-SUN complexes also function during interphase to help organize chromatin. For example, in S. pombe, the Kms2-Sad1 nuclear-envelope bridge connects the SPB to centromeric heterochromatin through the Ndc80 kinetochore complex (Fig. 4D) (King et al., 2008
). The S. cerevisiae Mps3 SUN protein is also required for telomere association with the INM in mitotic cells (Bupp et al., 2007
). Although not yet demonstrated, KASH-SUN complexes are likely to play similar roles in higher eukaryotes.
| Possible links between Syne proteins and disease |
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Recently, Syne-1 was linked to a neurological disease in a group of French-Canadian families. Mutations in Syne-1 were found to be causative of autosomal recessive cerebellar ataxia type 1 (ARCA-1; also known as recessive ataxia of Beauce), a late-onset ataxia with a slow progression (Gros-Louis et al., 2007
). It remains to be seen whether ARCA-1 mutations in Syne-1 disrupt nuclear-envelope-associated functions of Syne proteins. Further studies are therefore required to understand whether and how nuclear positioning contributes to ARCA-1.
Other studies point to a role for Syne proteins in the pathogenesis of Emery-Dreifuss muscular dystrophy (EDMD). Heterozygous mutations have been found in Syne-1 and Syne-2 from EDMD patients with wild-type lamin and emerin genes. The fibroblasts from such patients show changes in nuclear morphology that phenocopy Syne-1-siRNA-transfected fibroblasts (Zhang et al., 2007a
). Syne proteins bind emerin in vitro and emerin mutations causing EDMD disrupt this interaction. These data suggest that Syne proteins function with emerin and that disrupting this interaction causes phenotypes that are indicative of an uncoupling of the nucleus and cytoskeleton, leading to the progression of EDMD (Wheeler et al., 2007
; Zhang et al., 2007a
). It remains to be determined whether mutations in KASH or SUN proteins are causative for EDMD.
Finally, Syne-2 appears to play a role in the progression of the premature-aging disease progeria. In a study by Kandert et al. (Kandert et al., 2007
), fibroblasts from a patient with progeria had nuclei with abnormal morphologies, including blebs between the INM and ONM; these blebs are similar to those seen in other cell lines in which interactions between SUN and KASH proteins have been disrupted (Crisp et al., 2006
). Furthermore, Syne-2 localization is correlated with the severity of the nuclear-morphology defects – the more severe the defect, the less Syne-2 is observed at the nuclear envelope (Kandert et al., 2007
). Thus, one probable function of Syne-2 is to `safeguard' the structural integrity of the nuclear envelope (Kandert et al., 2007
). It is not known, however, whether mutations in SUN or KASH proteins are a cause of progeria. On the basis of these examples, defects in SUN-KASH protein interactions are likely to have an important role in the progression of a variety of laminopathies.
| Perspectives |
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Many unanswered questions remain about the nuclear-envelope bridge. Most KASH proteins have not been proven to be on the ONM, as traditional immunofluorescence experiments lack the resolution necessary to distinguish ONM from INM. New imaging techniques, such as structured illumination microscopy, could be used to address this issue (Schermelleh et al., 2008
). Given the importance of the central link of this bridge, much more needs to be understood about how KASH and SUN proteins interact. What is the stoichiometry of SUN proteins to KASH proteins? How do these proteins interact with one another across a double-membrane structure? Answers to these questions will probably require protein-structure data. How do SUN proteins switch interactions between different KASH proteins? What proteins are involved in the regulation of this switch?
Besides the bridge itself, the cellular mechanisms that are described in Figs 3 and 4 remain to be fully elucidated. Many of the players that link the nucleoplasmic domain of SUN proteins to the nuclear lamina and chromosomes are unknown. Also, mechanisms of how KASH proteins function are not completely understood. For example, how does UNC-83 function during nuclear migration? Furthermore, there are likely to be multiple KASH proteins that remain to be identified. Given the weak homology of the KASH domains in Csm4 or ZYG-12, this daunting task is unlikely to be solved using bioinformatics tools. A more fruitful approach to find more divergent KASH-domain-containing proteins might be through investigating proteins that interact with SUN proteins. Using a split-ubiquitin yeast two-hybrid assay, we have recently identified KDP-1 as a new, essential KASH protein in C. elegans (M. McGee and D.A.S., unpublished data). Finally, recent developments in the field suggest that KASH proteins at the ONM have a global effect on the cytoskeleton of the cell (Gieni and Hendzel, 2008
; Stewart-Hutchinson et al., 2008
), raising the exciting possibility that KASH proteins are involved in direct mechanotransduction of signals from the plasma membrane to the chromatin. Thus, the roles of KASH and SUN proteins and the nuclear-envelope bridge keep expanding.
| Footnotes |
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| References |
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