spacer gif spacer gif spacer gif spacer gif spacer gif
 QUICK SEARCH:   [advanced]


spacer gif
     Home     Help     Feedback     Subscriptions     Archive     Search     Table of Contents    


This Article
Right arrow Summary Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Dirks, R. W.
Right arrow Articles by Raap, A. K.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Dirks, R. W.
Right arrow Articles by Raap, A. K.
Antoniou, M., Carmo-Fonseca, M., Ferreira, J. and Lamond, A. I (1993). Nuclear organization of splicing snRNPs during differentiation of murine erythroleukemia cells in vitro. J. Cell Biol 123, 1055-1068.[Abstract/Free Full Text]

Bauren, G. and Wieslander, L (1994). Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription. Cell 76, 183-192.[Medline]

Bauren, G., Jiang, W.-Q., Bernholm, K., Gu, F. and Wieslander, L (1996). Demonstration of a dynamic, transcription-dependent organization of pre-mRNA splicing factors in polytene nuclei. J. Cell Biol 133, 929-941.[Abstract/Free Full Text]

Beyer, A. L. and Osheim, Y. N (1988). Splice site selection, rate of splicing, and alternative splicing on nascent transcripts. Genes Dev 2, 754-765.[Abstract/Free Full Text]

Bond, U (1988). Heat shock but not other stress inducers leads to the disruption of a sub-set of snRNPs and inhibition of in vitro splicing in HeLa cells. EMBO J 7, 3509-3518.[Medline]

Boom, R., Geelen, J. L., Sol, C. J., Raap, A. K., Minnaar, R. P., Klaver, B. P. and van der Noordaa, J (1986). Establishment of a rat cell line inducible for the expression of human cytomegalovirus immediate early gene products by protein synthesis inhibitors. J. Virol 58, 851-859.[Abstract/Free Full Text]

Boom, R., Sol, C. J. A., Minnaar, R. P., Geelen, J. L. M. C., Raap, A. K. and van der Noordaa, J (1988). Induction of gene expression under human cytomegalovirus immediate early enhancer-promoter control by inhibition of protein synthesis is cell cycle-dependent. J. Gen. Virol 69, 1179-1193.[Abstract/Free Full Text]

Bregman, D. B., Du, L., van der Zee, S. and Warren, S. L (1995). Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains. J. Cell Biol 129, 287-298.[Abstract/Free Full Text]

Bridge, E., Xia, D.-X., Carmo-Fonseca, M., Cardinali, B., Lamond, A. I. and Pettersson, U (1995). Dynamic organization of splicing factors in adenovirus-infected cells. J. Virol 69, 281-290.[Abstract]

Carmo-Fonseca, M., Pepperkok, R., Carvalho, M. T. and Lamond, A. I (1992). Transcription-dependent colocalization of the U1, U2, U4/U6, and U5 snRNPs in coiled bodies. J. Cell Biol 117, 1-14.[Abstract/Free Full Text]

Carter, K. C., Taneja, K. L. and Lawrence, J. B (1991). Discreate nuclear domains of poly(A) RNA and their relationship to the functional organization of the nucleus. J. Cell Biol 115, 1191-1202.[Abstract/Free Full Text]

Carter, K. C., Bowman, D., Carrington, W., Fogarty, K., McNeil, J. A., Fay, F. S. and Lawrence, J. B (1993). A three-dimensional view of precursor messenger RNA metabolism within the mammalian cell nucleus. Science 259, 1330-1335.[Abstract/Free Full Text]

Chang, D. D. and Sharp, P. A (1989). Regulation by HIV Rev depends upon recognition of splice sites. Cell 59, 789-795.[Medline]

Clemson, C. M., McNeil, J. A., Willard, H. F. and Lawrence, J. B (1996). XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure. J. Cell Biol 132, 259-275.[Abstract/Free Full Text]

Colwill, K., Pawson, T., Andrews, B., Prasad, J., Manley, J. L., Bell, J. C. and Duncan, P. I (1996). The Clk/Sty protein kinase phosphorylates SR splicing factors and regulates their intranuclear distribution. EMBO J 15, 265-275.[Medline]

Company, M., Arenas, J. and Abelson, J (1991). Requirement of the RNA helicase-like protein PRP22 for the release of messenger RNA from spliceosomes. Nature 349, 487-493.[Medline]

Dirks, R. W., van Gijlswijk, R. P. M., Vooijs, M. A., Smit, A. B., Bogerd, J., van Minnen, J., Raap, A. K. and van der Ploeg, M (1991). 3-End fluorochromized and haptenized oligonucleotides as in situ hybridization probes for multiple, simultaneous RNA detection. Exp. Cell Res 194, 310-315.[Medline]

Dirks, R. W., van de Rijke, F. M., Fujishita, S., van der Ploeg, M. and Raap, A. K (1993). Methodologies for specific intron and exon localization in cultured cells by haptenized and fluorochromized probes. J. Cell Sci 104, 1187-1197.[Abstract]

Dirks, R. W., Dani\221l, K. C. and Raap, A. K (1995). RNAs radiate from gene to cytoplasm as revealed by fluorescence in situ hybridization. J. Cell Sci 108, 2565-2572.[Abstract]

Dirks, R. W. and Raap, A. K (1995). Cell-cycle-dependent gene expression studied by two-colour fluorescent detection of a mRNA and histone mRNA. Histochem. Cell Biol 104, 391-395.[Medline]

Fakan, S., Puvion, E. and Spohr, G (1976). Localization and characterizationof newly synthesized nuclear RNA in isolated rat hepatocytes. Exp. Cell Res 99, 155-164.[Medline]

Fakan, S. and Puvion, E (1980). The ultrastructural visualization of nucleolar and extranucleolar RNA synthesis and distribution. Int. Rev. Cytol 65, 255-299.[Medline]

Fu, X.-D. and Maniatis, T (1990). Factor required for mammalian spliceosome assembly is localized to discrete regions in the nucleus. Nature 343, 437-441.[Medline]

Gui, J.-F., Lane, W. S. and Fu, X.-D (1994). A serine kinase regulates intracellular localization of splicing factors in the cell cycle. Nature 369, 678-682.[Medline]

Haaf, T. and Ward, D. C (1996). Inhibition of RNA polymerase II transcription causes chromatin decondensation, loss of nucleolar structure, and dispersion of chromosomal domains. Exp. Cell Res 224, 163-173.[Medline]

Huang, S. and Spector, D. L (1991). Nascent pre-mRNA transcripts are associated with nuclear regions enriched in splicing factors. Genes Dev 5, 2288-2302.[Abstract/Free Full Text]

Huang, S., Deerinck. T. J., Ellisman, M. H. and Spector, D. L (1994). In vivo analysis of the stability and transport of nuclear poly(A)+RNA. J. Cell Biol 126, 877-899.[Abstract/Free Full Text]

Huang, S. and Spector, D. L (1996). Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription. J. Cell Biol 133, 719-732.[Abstract/Free Full Text]

Jackson, D. A., Hassan, A. B., Errington, R. J. and Cook, P. R (1993). Visualization of focal sites of transcription within human nuclei. EMBO J 12, 1059-1065.[Medline]

Jimenez-Garc\222a, L. F. and Spector, D. L (1993). . In vivo evidence that transcription and splicing are coordinated by a recruiting mechanism. Cell 73, 47-59.[Medline]

Kiseleva, E., Wurtz, T., Visa, N. and Daneholt, B (1994). Assembly and disassembly of spliceosomes along a specific pre-messenger RNP fiber. EMBO J 13, 6052-6061.[Medline]

Krause, S., Fakan, S., Weis, K. and Wahle, E (1994). Immunodetection of poly(A) binding protein II in the cell nucleus. Exp. Cell Res 214, 75-82.[Medline]

Lawrence, J. B., Singer, R. H. and Marselle, L. M (1989). Highly localized tracks of specific transcripts within interphase nuclei visualized by in situ hybridization. Cell 57, 493-502.[Medline]

Legrain, P. and Rosbash, M (1989). Some cis-and trans-acting mutants for splicing target pre-mRNA to the cytoplasm. Cell 57, 573-583.[Medline]

LeMaire, M. F. and Thummel, C. S (1990). Splicing precedes polyadenylation during Drosophila E74A transcription. Mol. Cell. Biol 10, 6059-6063.[Abstract/Free Full Text]

Lutz, C. S., Murthy, K. G. K., Schek, N., O'Connor, J. P., Manley, J. L. and Alwine, J. C (1996). Interaction between the U1 snRNP-A protein and the 160-kD subunit of cleavage-polyadenylation specificity factor increases polyadenylation efficiency in vitro. Genes Dev 10, 325-337.[Abstract/Free Full Text]

Macville, M. V. E., Wiesmeijer, K. C., Fransen, J. A. M., Dirks, R. W. and Raap, A. K (1995). Detection of specific messenger RNA by electron microscopic in situ hybridization: implications for nucleocytoplasmic transport. Eur. J. Cell Biol 68, 470-474.[Medline]

Mattaj, I. W., Tollervey, D. and Seraphin, B (1993). Small nuclear RNAs in messenger RNA and ribosomal RNA processing. FASEB J 7, 47-53.[Abstract]

Moen, P. T., Smith, K. P. and Lawrence, J. B (1995). Compartmentalization of specific pre-mRNA metabolism: an emerging view. Hum. Mol. Genet 4, 1779-1789.[Abstract]

Nesic, D. and Maquat, L. E (1994). Upstream introns influence the efficiency of final intron removal and RNA 3-end formation. Genes Dev 8, 363-375.[Abstract/Free Full Text]

Nesic, D., Zhang, J. and Maquat, L. E (1995). Lack of an effect of the efficiency of RNA 3-end formation on the efficiency of removal of either the final or the penultimate intron in intact cells. Mol. Cell. Biol 15, 488-496.[Abstract]

Niwa, M. and Berget, S. M (1991). Mutation of the AAUAAA polyadenylation signal depresses in vitro splicing of proximal but not distal introns. Genes Dev 5, 2086-2095.[Abstract/Free Full Text]

Ohno, M. and Shimura, Y (1996). A human RNA helicase-like protein, HRH1, facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Genes Dev 10, 997-1007.[Abstract/Free Full Text]

O'Keefe, R. T., Mayeda, A., Sadowski, C. L., Krainer, A. R. and Spector, D. L (1994). Disruption of pre-mRNA splicing in vivo results in reorganization of splicing factors. J. Cell Biol 124, 249-260.[Abstract/Free Full Text]

Phelan, A., Carmo-Fonseca, M., McLauchlan, J., Lamond, A. I. and Clements, J. B (1993). A herpes simplex virus type 1 immediate-early gene product, IE63, regulates small nuclear ribonucleoprotein distribution. Proc. Nat. Acad. Sci.USA 90, 9056-9060.[Abstract/Free Full Text]

Pombo, A., Ferreira, J., Bridge, E. and Carmo-Fonseca, M (1994). Adenovirus replication and transcription sites are spatially separated in the nucleus of infected cells. EMBO J 13, 5075-5085.[Medline]

Puvion-Dutilleul, F., Bachellerie, J.-P., Visa, N. and Puvion, E (1994). Rearrangements of intranuclear structures involved in RNA processing in response to adenovirus infection. J. Cell Sci 107, 1457-1468.[Abstract]

Raap, A. K., van de Rijke, F. M., Dirks, R. W., Sol, C. J., Boom, R. and van der Ploeg, M (1991). Bicolor fluorescence in situ hybridization to intron and exon mRNA sequences. Exp. Cell Res 197, 319-322.[Medline]

Reuter, R., Appel, B., Bringmann, P., Rinke, J. and Luhrmann, R (1984). 5-Terminal caps of snRNAs are reactive with antibodies specific for 2,2,7-trimethylguanosine in whole cells and nuclear matrices. Exp. Cell Res 154, 548-560.[Medline]

Schul, W., Groenhout, B., Koberna, K., Takagaki, Y., Jenny, A., Manders, E. M. M., Raska, I., Van Driel, R. and De Jong, L (1996). The RNA 3cleavage factors CstF 64 kDa and CPSF 100 kDa are concentrated in nuclear domains closely associated with coiled bodies and newly synthesized RNA. EMBO J 15, 2883-2892.[Medline]

Spector, D. L., Schrier, W. H. and Busch, H (1983). Immunoelectron microscopic localization of snRNPs. Biol. Cell 49, 1-10.[Medline]

Spector, D. L., Xiang-Dong, F. and Maniatis, T (1991). Associations between distinct pre-mRNA splicing components and the cell nucleus. EMBO J 10, 3467-3481.[Medline]

Spector, D. L (1993). Macromolecular domains within the cell nucleus. Annu. Rev. Cell Biol 9, 265-315.

Spector, D. L., O'Keefe, R. T. and Jimenez-Garc\222a, L. F (1993). Dynamics of transcription and pre-mRNA splicing within the mammalian cell nucleus. Cold Spring Harbor Symp. Quant. Biol 58, 799-805.[Abstract/Free Full Text]

Takagaki, Y., Manley, J. L., MacDonald, C. C., Wilusz, J. and Shenk, T (1990). A multisubunit factor, CstF, is required for polyadenylation of mammalian pre-mRNAs. Genes Dev 4, 2112-2120.[Abstract/Free Full Text]

Tanke, H. J., Florijn, R. J., Wiegant, J., Raap, A. K. and Vrolijk, J (1995). CCD microscopy and image analysis of cells and chromosomes stained by fluorescence in situ hybridization. Histochem. J 27, 4-14.[Medline]

Wansink, D. G., Schul, W., van der Kraan, I., van Steensel, B., van Driel, R. and de Jong, L (1993). Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus. J. Cell Biol 122, 283-293.[Abstract/Free Full Text]

Wassarman, D. A. and Steitz, J. A (1992). Interactions of small nuclear RNAs with precursor messenger RNA during in vitro splicing. Science 257, 1918-1925.[Abstract/Free Full Text]

Wassarman, K. M. and Steitz, J. A (1993). Association with terminal exons in pre-mRNAs: a new role for the U1 snRNP?. Genes Dev 7, 647-659.[Abstract/Free Full Text]

Wu, Z., Murphy, C., Callan, H. G. and Gall, J. G (1991). Small nuclear ribonucleoproteins and heterogeneous nuclear ribonucleoproteins in the amphibian germinal vesicle: loops, spheres, and snurposomes. J. Cell Biol 113, 465-483.[Abstract/Free Full Text]

Wuarin, Y. and Schibler, U (1994). Physical isolation of nascent RNA chains transcribed by RNA polymerase II: evidence for cotranscriptional splicing. Mol. Cell Biol 14, 7219-7225.[Abstract/Free Full Text]

Xing, Y., Johnson, C. V., Dobner, P. R. and Lawrence, J. B (1993). Higher level organization of individual gene transcription and RNA splicing. Science 259, 1326-1330.[Abstract/Free Full Text]

Xing, Y., Johnson, C. V., Moen, P. T., McNeil, J. A. and Lawrence, J. B (1995). Nonrandom gene organization: structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains. J. Cell Biol 131, 1635-1647.[Abstract/Free Full Text]

Zachar, Z., Kramer, J., Mims, I. P. and Bingham, P. M (1993). Evidence for channeled diffusion of pre-mRNAs during nuclear RNA transport in Metazoans. J. Cell Biol 121, 729-742.[Abstract/Free Full Text]

Zhang, G., Taneja, K. L., Singer, R. H. and Green, M. R (1994). Localization of pre-mRNA splicing in mammalian nuclei. Nature 372, 809-812.[Medline]




This article has been cited by other articles:


Home page
J. Cell Sci.Home page
E. Wegel, R. H. Vallejos, P. Christou, E. Stoger, and P. Shaw
Large-scale chromatin decondensation induced in a developmentally activated transgene locus
J. Cell Sci., March 1, 2005; 118(5): 1021 - 1031.
[Abstract] [Full Text] [PDF]


Home page
JCBHome page
C. Molenaar, A. Abdulle, A. Gena, H. J. Tanke, and R. W. Dirks
Poly(A)+ RNAs roam the cell nucleus and pass through speckle domains in transcriptionally active and inactive cells
J. Cell Biol., April 26, 2004; 165(2): 191 - 202.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
D. DeSousa, M. Mukhopadhyay, P. Pelka, X. Zhao, B. K. Dey, V. Robert, A. Pelisson, A. Bucheton, and A. R. Campos
A Novel Double-stranded RNA-binding Protein, Disco Interacting Protein 1 (DIP1), Contributes to Cell Fate Decisions during Drosophila Development
J. Biol. Chem., September 26, 2003; 278(39): 38040 - 38050.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
S. P. Snaar, P. Verdijk, H. J. Tanke, and R. W. Dirks
Kinetics of HCMV immediate early mRNA expression in stably transfected fibroblasts
J. Cell Sci., January 15, 2002; 115(2): 321 - 328.
[Abstract] [Full Text] [PDF]


Home page
J. Histochem. Cytochem.Home page
C. M. Hattinger, A. G. Jochemsen, H. J. Tanke, and R. W. Dirks
Induction of p21 mRNA Synthesis After Short-wavelength UV Light Visualized in Individual Cells by RNA FISH
J. Histochem. Cytochem., January 1, 2002; 50(1): 81 - 90.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
C. Molenaar, S. A. Marras, J. C. M. Slats, J.-C. Truffert, M. Lemaitre, A. K. Raap, R. W. Dirks, and H. J. Tanke
Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells
Nucleic Acids Res., September 1, 2001; 29(17): e89 - e89.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
P. Bell, L. J. Montaner, and G. G. Maul
Accumulation and Intranuclear Distribution of Unintegrated Human Immunodeficiency Virus Type 1 DNA
J. Virol., August 15, 2001; 75(16): 7683 - 7691.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. N. Szentirmay and M. Sawadogo
SURVEY AND SUMMARY: Spatial organization of RNA polymerase II transcription in the nucleus
Nucleic Acids Res., May 15, 2000; 28(10): 2019 - 2025.
[Abstract] [Full Text] [PDF]


Home page
Mol. Biol. CellHome page
I. Melcak, K. Koberna, and J. Malínský
Nuclear pre-mRNA Compartmentalization: Trafficking of Released Transcripts to Splicing Factor Reservoirs
Mol. Biol. Cell, February 1, 2000; 11(2): 497 - 510.
[Abstract] [Full Text]


Home page
JCBHome page
C. Jolly, C. Vourc'h, M. Robert-Nicoud, and R. I. Morimoto
Intron-independent Association of Splicing Factors with Active Genes
J. Cell Biol., June 14, 1999; 145(6): 1133 - 1143.
[Abstract] [Full Text] [PDF]


Home page
J. Histochem. Cytochem.Home page
S. P. Snaar, M. Vincent, and R. W. Dirks
RNA Polymerase II Localizes at Sites of Human Cytomegalovirus Immediate-early RNA Synthesis and Processing
J. Histochem. Cytochem., February 1, 1999; 47(2): 245 - 254.
[Abstract] [Full Text]


Home page
J. Cell Sci.Home page
P Collas, M. Liang, M Vincent, and P Alestrom
Active transgenes in zebrafish are enriched in acetylated histone H4 and dynamically associate with RNA Pol II and splicing complexes
J. Cell Sci., January 4, 1999; 112(7): 1045 - 1054.
[Abstract] [PDF]


Home page
J. Cell Sci.Home page
J. Bridger, H Herrmann, C Munkel, and P Lichter
Identification of an interchromosomal compartment by polymerization of nuclear-targeted vimentin
J. Cell Sci., January 5, 1998; 111(9): 1241 - 1253.
[Abstract] [PDF]


Home page
J. Histochem. Cytochem.Home page
C. Jolly, F. Mongelard, M. Robert-Nicoud, and C. Vourc'h
Optimization of Nuclear Transcript Detection by FISH and Combination with Fluorescence Immunocytochemical Detection of Transcription Factors
J. Histochem. Cytochem., December 1, 1997; 45(12): 1585 - 1592.
[Abstract] [Full Text] [PDF]


This Article
Right arrow Summary Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Dirks, R. W.
Right arrow Articles by Raap, A. K.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Dirks, R. W.
Right arrow Articles by Raap, A. K.