Direct cloning and analysis of DNA sequences from a region of the Chinese hamster genome associated with aphidicolin-sensitive fragility

QUICK SEARCH:

[advanced]

	Author:		Keyword(s):

Home Help Feedback Subscriptions Archive Search Table of Contents

This Article

	Summary
	Full Text (PDF)
	Alert me when this article is cited
	Alert me if a correction is posted

Services

	Email this article to a friend
	Similar articles in this journal
	Similar articles in PubMed
	Alert me to new issues of the journal
	Download to citation manager


Citing Articles

	Citing Articles via HighWire
	Citing Articles via Google Scholar

Google Scholar

	Articles by Palin, A. H.
	Articles by Farr, C. J.
	Search for Related Content

PubMed

	PubMed Citation
	Articles by Palin, A. H.
	Articles by Farr, C. J.


Social Bookmarking

	What's this?

Albert, F. G., Bronson, E. C., Fitzgerald, D. J. and Anderson, J. N (1995). Circular structures in retroviral and cellular genomes. J. Biol. Chem 270, 23570-23581.[Abstract/Free Full Text]

Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhnag, Z., Miller, W. and Lipman, D. J (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl. Acids Res 25, 3389-3402.[Abstract/Free Full Text]

Austin, M. J., Collins, J. M., Corey, L. A., Nance, W. E., Neale, M. C., Schieken, R. M. and Brown, J. A (1992). Aphidicolin-inducible common fragile site expression: Results from a population survey of twins. Am. J. Hum. Genet 50, 76-83.[Medline]

Bailey, A. D., Li, Z., Pavelitz, T. and Weiner, A. M (1995). Adenovirus type 12-induced fragility of the human RNU2 locus requires U2 small nuclear RNA transcriptional regulatory elements. Mol. Cell. Biol 15, 6246-6255.[Abstract]

Boldog, F. L., Waggoner, B., Glover, T. W., Chumakov, I., Le Paslsier, D., Cohen, D., Gemmill, R. M. and Drabkin, H. A (1994). Integrated YAC contig containing the 3p14 hereditary renal cell carcinoma 3;8 translocation breakpoint and the fragile site FRA3B. Genes, Chromosomes and Cancer 11, 216-221.[Medline]

Boldog, F., Gemmill, R. M., West, J., Robinson, M., Robinson, L., Li, E., Roche, J., Todd, S., Waggoner, B., Lundstrom, R., Jacobson, J., Mullokandov, M. R., Klinger, H. and Drabkin, H. A (1997). Chromosome 3p14 homozygous deletions and sequence analysis of FRA3B. Hum. Mol. Genet 6, 193-203.[Abstract/Free Full Text]

Boulikas, T (1996). Common structural features of replication origins in all life forms. J. Cell. Biochem 60, 297-316.[Medline]

Caporossi, D., Vernole, P., Nicoletti, B. and Tedeschi, B (1995). Characteristic chromosomal fragility of human embryonic cells exposed in vitro to aphidicolin. Hum. Genet 96, 269-274.[Medline]

Coquelle, A., Piparas, E., Toledo, F., Buttin, G. and Debatisse, M (1997). Expression of fragile sites triggers intrachromosomal mammalian gene amplification and sets boundaries to early amplicons. Cell 89, 215-225.[Medline]

Djalali, M., Adolph, S., Steinbach, P., Winking, H. and Hameister, H (1987). A comparative mapping study of fragile sites in the human and murine genomes. Hum. Genet 77, 157-162.[Medline]

Dobbs, D. L., Shaiu, W.-L. and Benbow, R. M (1994). Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA. Nucl. Acids Res 22, 2479-2489.[Abstract/Free Full Text]

Durnam, D. M., Menninger, J. C., Chandler, S. H., Smith, P. P. andMcDougall, J. K (1988). A fragile site in the human U2 small nuclear RNA gene cluster is revealed by Adenovirus type 12 infection. Mol. Cell. Biol 8, 1863-1867.[Abstract/Free Full Text]

Eckdahl, T. T. and Anderson, J. N (1987). Computer modelling of DNA structures involved in chromosome maintenance. Nucl. Acids Res 15, 8531-8545.[Abstract/Free Full Text]

Eckdahl, T. T. and Anderson, J. N (1990). Conserved DNA structures in origins of replication. Nucl. Acids Res 18, 1609-1612.[Abstract/Free Full Text]

Farr, C. J., Bayne, R. A. L., Kipling, D., Mills, W., Critcher, R. and Cooke, H. J (1995). Generation of a human X-derived minichromosome using telomere-associated chromosome fragmentation. EMBO J 14, 5444-5454.[Medline]

Fitzgerald, D. J., Dryden, G. L., Bronson, E. C., Williams, J. S. and Anderson, J. N (1994). Conserved patterns of bending in satellite and nucleosome positioning DNA. J. Biol. Chem 269, 21303-21314.[Abstract/Free Full Text]

Gaddini, L., Belliccia, F., Limongi, M. Z. and Rocchi, A (1995). Study of the relationship between common fragile sites, chromosome breakages and sister chromatid exchanges. Mutagenesis 10, 257-260.[Abstract/Free Full Text]

Gargano, S., Wang, P., Rusanganwa, E. and Bacchetti, S (1995). The transcriptionally competent U2 gene is necessary and sufficient for Adenovirus type 12 induction of the fragile site at 17q21-22. Mol. Cell. Biol 15, 6256-6261.[Abstract]

Glover, T. M., Berger, C., Coyle, J. and Echo, B (1984). DNA polymerase alpha inhibition by aphidicolin induces gaps and breaks at common fragile sites in human chromosomes. Hum. Genet 67, 136-142.[Medline]

Glover, T. W. and Stein, C. K (1987). Induction of sister chromatid exchanges at common fragile sites. Am. J. Hum. Genet 41, 882-890.[Medline]

Glover, T. W. and Stein, C. K (1988). Chromosome breakage and recombination at fragile sites. Am. J. Hum. Genet 43, 265-273.[Medline]

Grosveld, F. G., Lund, T., Murray, E. J., Mellor, A. L., Dahl, H. H. M. and Flavell, R. A (1982). The construction of cosmid libraries which can be used to transform eukaryotic cells. Nucl. Acids Res 10, 6715-6732.[Abstract/Free Full Text]

Hirst, M. C., Barnicoat, A., Flynn, G., Wang, Q., Daker, M., Buckle, V. J., Davies, K. E. and Bobrow, M (1993). The identification of a third fragile site, FRAXF in Xq27-q28 distal to both FRAXA and FRAXE. Hum. Mol. Genet 2, 197-200.[Abstract/Free Full Text]

Hunt, P. A. and Burgoyne, P. S (1987). A tissue specific fragile site associated with the sex reversed (SXR) mutation in the mouse. Chromosoma 96, 67-71.[Medline]

Inoue, H., Ishii, H., Alder, H., Snyder, E., Druck, T., Huebner, K. and Croce, C. M (1997). Sequence of the FRA3B common fragile region: Implications for the mechanism of FHIT deletion. Proc. Nat. Acad. Sci. USA 94, 14584-14589.[Abstract/Free Full Text]

Jones, C., Slijepcevic, P., Marsh, S., Baker, E., Langdon, W. Y., Richards, R. I. and Tunnacliffe, A (1994). Physical linkage of the fragile site FRA11B and a Jacobsen syndrome chromosome deletion breakpoint in 11q23.3. Hum. Mol. Genet 3, 2123-2130.[Abstract/Free Full Text]

Jones, C., Penny, L., Mattina, T., Yu, S., Baker, E., Voullaire, L., Langdon, W. Y., Sutherland, G. R., Richards, R. I. and Tunnacliffe, A (1995). Association of a chromosome deletion syndrome with a fragile site within the proto-oncogene CBL2. Nature 376, 145-149.[Medline]

Kremer, E. J., Pritchard, M., Lynch, M., Yu, S., Holman, K., Baker, E., Warren, S. T., Schlessinger, D., Sutherland, G. R. and Richards, R. I (1991). Mapping of DNA instability at the Fragile X to a trinucleotide repeat sequence p(CCG)n. Science 252, 1711-1714.[Abstract/Free Full Text]

Kuo, M. T., Vyas, R. C., Jiang, L.-X. and Hittelman, W. N (1994). Chromosome breakage at a major fragile site associated with P-glycoprotein gene amplification in multidrug resistant CHO cells. Mol. Cell. Biol 14, 5202-5211.[Abstract/Free Full Text]

Laemmli, U. K., Kas, E., Poljak, L. and Adachi, Y (1992). Scaffold associated regions: Cis-acting determinants of chromatin structural loops and functional domains. Curr. Opin. Genet. Dev 2, 275-285.[Medline]

LeBeau, M. M. and Rowley, J. D (1984). Heritable fragile sites in cancer. Nature 308, 607-608.[Medline]

Lin, M. S., Takabayashi, T., Wilson, M. G. and Marchese, C. A (1984). An in vitro and in vivo study of a BrdU sensitive fragile site in the Chinese hamster. Cytogenet. Cell Genet 38, 211-215.[Medline]

McDougall, J. K (1979). The interactions of Adenovirus with host cell gene loci. Cytogenet. Cell Genet 25, 183-.

Miro, R., Clemente, I. C., Fuster, C. and Egozcue, J (1987). Fragile sites, chromosome evolution and human neoplasia. Hum. Genet 75, 345-349.[Medline]

Murano, I., Kuwano, A. and Kajii, T (1989). Fibroblast specific common fragile sites induced by aphidicolin. Hum. Genet 83, 45-48.[Medline]

Nancarrow, J. K., Kremer, E., Holman, K., Eyre, H., Doggett, N. A., Le Paslier, D., Callen, D. F., Sutherland, G. R. and Richards, R. I (1994). Implications of FRA16A structure for the mechanism of chromosomal fragile site genesis. Science 264, 1938-1941.[Abstract/Free Full Text]

Natale, D. A., Schubert, A. E. and Kowalski, D (1992). DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Nat. Acad. Sci. USA 89, 2654-2658.[Abstract/Free Full Text]

Oberle, I., Rousseau, F., Heitz, D., Kretz, C., Devys, D., Hanauer, A., Boue, J., Bertheas, M. F. and Mandel, J. L (1991). Instability of a 550-base pair DNA segment and abnormal methylation in Fragile X syndrome. Science 252, 1097-1102.[Free Full Text]

Ohta, M., Inoue, H., Cotticelli, M. G., Kastury, K., Baffa, R., Palazzo, J., Siprashvili, Z., Mori, M., McCue, P., Druck, T., Croce, C. M. and Huebner, K (1996). The FHIT gene, spanning the chromosome 3p14.2 fragile site and renal carcinoma-associated t(3;8) breakpoint, is abnormal in digestive tract cancers. Cell 84, 587-597.[Medline]

Ong, S. T., Fong, K. M., Bader, S. A., Minna, J. D., Le Beau, M. M., McKeithan, T. W. and Rassool, F. V (1997). Precise localization of the FHIT gene to the common fragile site at 3p14.2 (FRA3B) and characterization of homozygous deletions within FRA3B that affect FHIT transcription in tumor cell lines. Genes Chromosomes Cancer 20, 16-23.[Medline]

Paradee, W., Mullins, C., He, Z., Glover, T., Wilke, C., Opalka, B., Schutte, J. and Smith, D. I (1995). Precise localization of aphidicolin induced breakpoints on the short arm of human chromosome 3. Genomics 27, 358-361.[Medline]

Paradee, W., Wilke, C. M., Wang, L., Shridhar, R., Mullins, C. M., Hoge, A., Glover, T. W. and Smith, D. I (1996). A 350 kb cosmid contig in 3p14.2 that crosses the t(3;8) hereditary renal cell carcinoma translocation breakpoint and 17 aphidicolin induced FRA3B breakpoints. Genomics 35, 87-93.[Medline]

Pearson, W. R. and Lipman, D. J (1988). Improved tools for biological sequence comparison. Proc. Nat. Acad. Sci. USA 85, 2444-2448.[Abstract/Free Full Text]

Pipiras, E., Coquelle, A., Bieth, A. and Debatisse, M (1998). Interstitial deletions and intrachromosomal amplification initiated from a double-strand break targeted to a mammalian chromosome. EMBO J 17, 325-333.[Medline]

Raap, A. K., van de Corput, M. P. C., Vervenne, R. A. W., van Gijlswiijk, R. P. M., Tanke, H. J. and Wiegant, J (1995). Ultra-sensitive FISH using peroxidase-mediated deposition of biotin-or fluorochrome tyramides. Hum. Mol. Genet 4, 529-534.[Abstract/Free Full Text]

Rainaldi, G., Sessa, M. R. and Mariani, T (1984). Inhibitors of DNA synthesis induce sister chromatid exchanges at the early S phase of the cell cycle. Chromosoma 90, 46-49.[Medline]

Rassool, F. V., McKeithen, T. W., Neilly, M. E., van Melle, E., Espinosa, R. and LeBeau, M. M (1991). Preferential integration of marker DNA into the chromosomal fragile site at 3p14: An approach to cloning fragile sites. Proc. Nat. Acad. Sci. USA 88, 6657-6661.[Abstract/Free Full Text]

Rassool, F. V., LeBeau, M. M., Shen, M.-L., Neilly, M. E., Espinosa III, R., Ong, S. T., Boldog, F., Drabkin, H., MacCarroll, R. and McKeithan, T. W (1996). Direct cloning of DNA sequences from the common fragile site region at chromosome band 3p14.2. Genomics 35, 109-117.[Medline]

Reid, L. H (1990). Regulatory elements in the introns of the human HPRT gene are necessary for its expression in embryonic stem cells. Proc. Nat. Acad. Sci. USA 87, 4299-4303.[Abstract/Free Full Text]

Robinson, T. J. and Elder, F. F. B (1987). Multiple common fragile sites are expressed in the genome of the laboratory rat. Chromosoma 96, 45-49.[Medline]

Saitoh, Y. and Laemmli, U. K (1994). Metaphase chromosome structure:Bands arise from a differential folding path of the highly AT-rich scaffold. Cell 76, 609-622.[Medline]

Smeets, D. and Arets, A (1990). Genetic determination of fragile site expression. Am. J. Hum. Genet 47, 196-201.[Medline]

Smeets, D. F. C. M. and van de Klundert, F. A. J. M (1990). Common fragile sites in man and three closely related primate species. Cytogenet. Cell Genet 53, 8-14.[Medline]

Stone, D. M., Jacky, P. B., Hancock, D. D. and Prieur, D. J (1991). Chromosomal fragile site expression in dogs: 1. Breed specific differences. Am. J. Med. Genet 40, 214-222.[Medline]

Sutherland, G. R. and Baker, E (1992). Characterisation of a new rare fragile site easily confused with the Fragile X. Hum. Mol. Genet 1, 111-113.[Abstract/Free Full Text]

Van Dyke, M. W., Hertzberg, R. P. and Dervan, P. B (1982). Map of distamycin, netropsin and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA\245Fe(II). Proc. Nat. Acad. Sci. USA 79, 5470-5474.[Abstract/Free Full Text]

Verkerk, A. J. M. H., Pieretti, M., Sutcliffe, J. S., Fu, Y.-H., Kuhl, D. P. A., Pizzuti, A., Reiner, O., Richards, S., Victoria, M. F., Zhang, F. et al (1991). Identification of a gene ( FMR1 ) containing a CCG repeat coincident with a breakpoint cluster region exhibiting length variation in Fragile X syndrome. Cell 65, 905-914.[Medline]

Wang, L., Paradee, W., Mullins, C., Shridhar, R., Rosati, R., Wilke, C. M., Glover, T. W. and Smith, D. I (1997). Aphidicolin-induced FRA3B breakpoints cluster in two distinct regions. Genomics 41, 485-458.[Medline]

Wang, L., Darling, J., Zhang, J.-S., Qian, C.-P., Hartmann, L., Conover, C., Jenkins, R. and Smith, D. I (1998). Frequent homozygous deletions in the FRA3B region in tumor cell lines still leave the FHIT exons intact. Oncogene 16, 635-642.[Medline]

Wang, Q., Albert, F. G., Fitzgerald, D. J., Calvo, J. M. and Anderson, J. N (1994). Sequence determinants of DNA bending in the ilvIH promoter and regulator region of E.coli. Nucl. Acids Res 22, 5753-5760.[Abstract/Free Full Text]

Wilke, C. M., Guo, S.-W., Hall, B. K., Boldog, F., Gemmill, R. M., Chandrasekharappa, S. C., Barcroft, C. L., Drabkin, H. A. and Glover, T. W (1994). Multicolour FISH mapping of YAC clones in 3p14 and identification of a YAC spanning both FRA3B and the t(3;8) associated with hereditary renal cell carcinoma. Genomics 22, 319-326.[Medline]

Wilke, C. M., Hall, B. K., Hoge, A., Paradee, W., Smith, D. I. and Glover, T. W (1996). FRA3B extends over a broad region and contains a spontaneous HPV16 integration site: Direct evidence for the coincidence of viral integration sites and fragile sites. Hum. Mol. Genet 5, 187-195.[Abstract/Free Full Text]

Wulf, H. C. and Niebuhr, E (1985). Different sister chromatid exchange rates in XX and XY cells of a pair of human chimeric twins. Cytogenet. Cell Genet 39, 105-108.[Medline]

Yu, S., Pritchard, M., Kremer, E., Lynch, M., Nancarrow, J., Baker, E., Holman, K., Muley, J. C., Warren, S. T., Schlessinger, D., Sutherland, G. R. and Richards, R. I (1991). Fragile X genotype characterised by an unstable region of DNA. Science 252, 1179-1181.[Free Full Text]

Yu, S., Mangelsdorf, M., Hewett, D., Hobson, L., Baker, E., Eyre, H. J., Lapsys, N., le Paslier, D., Doggett, N. A., Sutherland, G. R. and Richards, R. I (1997). Human chromosomal fragile site FRA16B is an amplified AT-rich minisatellite repeat. Cell 88, 367-374.[Medline]

Yunis, J. J. and Soreng, A. L (1984). Constitutive fragile sites and cancer. Science 226, 1199-1204.[Abstract/Free Full Text]

Zimonjic, D. B., Druck, T., Kastury, K., Croce, C. M., Popescu, N. C. and Huebner, K (1997). Positions of chromosome 3p14.2 fragile sites (FRA3B) within the FHIT gene. Cancer Res 57, 1166-1170.[Abstract/Free Full Text]

CiteULike

Complore

Connotea

Del.icio.us Add to Digg

Digg

Technorati

Twitter What's this?

This article has been cited by other articles:

F. Toledo, A. Coquelle, E. Svetlova, and M. Debatisse
Enhanced flexibility and aphidicolin-induced DNA breaks near mammalian replication origins: implications for replicon mapping and chromosome fragility
Nucleic Acids Res., December 1, 2000; 28(23): 4805 - 4813.
[Abstract] [Full Text] [PDF]

M. Mangelsdorf, K. Ried, E. Woollatt, S. Dayan, H. Eyre, M. Finnis, L. Hobson, J. Nancarrow, D. Venter, E. Baker, et al.
Chromosomal Fragile Site FRA16D and DNA Instability in Cancer
Cancer Res., March 1, 2000; 60(6): 1683 - 1689.
[Abstract] [Full Text]

T. Shiraishi, T. Druck, K. Mimori, J. Flomenberg, L. Berk, H. Alder, W. Miller, K. Huebner, and C. M. Croce
Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit
PNAS, May 8, 2001; 98(10): 5722 - 5727.
[Abstract] [Full Text] [PDF]

This Article

Summary

Full Text (PDF)

Alert me when this article is cited

Alert me if a correction is posted

Services

Email this article to a friend

Similar articles in this journal

Similar articles in PubMed

Alert me to new issues of the journal

Download to citation manager

Citing Articles

Citing Articles via HighWire

Citing Articles via Google Scholar

Google Scholar

Articles by Palin, A. H.

Articles by Farr, C. J.

Search for Related Content

PubMed

PubMed Citation

Articles by Palin, A. H.

Articles by Farr, C. J.

Social Bookmarking

What's this?

				M. Mangelsdorf, K. Ried, E. Woollatt, S. Dayan, H. Eyre, M. Finnis, L. Hobson, J. Nancarrow, D. Venter, E. Baker, et al. Chromosomal Fragile Site FRA16D and DNA Instability in Cancer Cancer Res., March 1, 2000; 60(6): 1683 - 1689. [Abstract] [Full Text]

				T. Shiraishi, T. Druck, K. Mimori, J. Flomenberg, L. Berk, H. Alder, W. Miller, K. Huebner, and C. M. Croce Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit PNAS, May 8, 2001; 98(10): 5722 - 5727. [Abstract] [Full Text] [PDF]