Cell biology of transcription and pre-mRNA splicing: nuclear architecture meets nuclear function

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PLANT CELL, November 1, 2006; 18(11): 3218 - 3234.
[Abstract] [Full Text] [PDF]

G. S. Ali and A. S. N. Reddy
ATP, phosphorylation and transcription regulate the mobility of plant splicing factors
J. Cell Sci., September 1, 2006; 119(17): 3527 - 3538.
[Abstract] [Full Text] [PDF]

I. Szivak, N. Lamb, and L. M. G. Heilmeyer
Subcellular Localization and Structural Function of Endogenous Phosphorylated Phosphatidylinositol 4-Kinase (PI4K92)
J. Biol. Chem., June 16, 2006; 281(24): 16740 - 16749.
[Abstract] [Full Text] [PDF]

J. R. Sanford, J. D. Ellis, D. Cazalla, and J. F. Caceres
Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor
PNAS, October 18, 2005; 102(42): 15042 - 15047.
[Abstract] [Full Text] [PDF]

Y. Fukamatsu, S. Mitsui, M. Yasuhara, Y. Tokioka, N. Ihara, S. Fujita, and T. Kiyosue
Identification of LOV KELCH PROTEIN2 (LKP2)-interacting Factors That Can Recruit LKP2 to Nuclear Bodies
Plant Cell Physiol., August 1, 2005; 46(8): 1340 - 1349.
[Abstract] [Full Text] [PDF]

N. Angelier, M. Tramier, E. Louvet, M. Coppey-Moisan, T. M. Savino, J. R. De Mey, and D. Hernandez-Verdun
Tracking the Interactions of rRNA Processing Proteins during Nucleolar Assembly in Living Cells
Mol. Biol. Cell, June 1, 2005; 16(6): 2862 - 2871.
[Abstract] [Full Text] [PDF]

J. H. Trembley, S. Tatsumi, E. Sakashita, P. Loyer, C. A. Slaughter, H. Suzuki, H. Endo, V. J. Kidd, and A. Mayeda
Activation of Pre-mRNA Splicing by Human RNPS1 Is Regulated by CK2 Phosphorylation
Mol. Cell. Biol., February 15, 2005; 25(4): 1446 - 1457.
[Abstract] [Full Text] [PDF]

K. Tominaga, Y. Johmura, M. Nishizuka, and M. Imagawa
Fad24, a mammalian homolog of Noc3p, is a positive regulator in adipocyte differentiation
J. Cell Sci., December 1, 2004; 117(25): 6217 - 6226.
[Abstract] [Full Text] [PDF]

A. Anyanful, K. Ono, R. C. Johnsen, H. Ly, V. Jensen, D. L. Baillie, and S. Ono
The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans
J. Cell Biol., November 22, 2004; 167(4): 639 - 647.
[Abstract] [Full Text] [PDF]

J. Vecerova, K. Koberna, J. Malinsky, E. Soutoglou, T. Sullivan, C. L. Stewart, I. Raska, and T. Misteli
Formation of Nuclear Splicing Factor Compartments Is Independent of Lamins A/C
Mol. Biol. Cell, November 1, 2004; 15(11): 4904 - 4910.
[Abstract] [Full Text] [PDF]

S. K. Zaidi, D. W. Young, J.-Y. Choi, J. Pratap, A. Javed, M. Montecino, J. L. Stein, J. B. Lian, A. J. van Wijnen, and G. S. Stein
Intranuclear Trafficking: Organization and Assembly of Regulatory Machinery for Combinatorial Biological Control
J. Biol. Chem., October 15, 2004; 279(42): 43363 - 43366.
[Abstract] [Full Text] [PDF]

Z. J. Lorkovic, S. Lopato, M. Pexa, R. Lehner, and A. Barta
Interactions of Arabidopsis RS Domain Containing Cyclophilins with SR Proteins and U1 and U11 Small Nuclear Ribonucleoprotein-specific Proteins Suggest Their Involvement in Pre-mRNA Splicing
J. Biol. Chem., August 6, 2004; 279(32): 33890 - 33898.
[Abstract] [Full Text] [PDF]

N. Saitoh, C. S. Spahr, S. D. Patterson, P. Bubulya, A. F. Neuwald, and D. L. Spector
Proteomic Analysis of Interchromatin Granule Clusters
Mol. Biol. Cell, August 1, 2004; 15(8): 3876 - 3890.
[Abstract] [Full Text] [PDF]

G. Pinon-Lataillade, C. Masson, J. Bernardino-Sgherri, V. Henriot, P. Mauffrey, Y. Frobert, S. Araneda, and J. F. Angulo
KIN17 encodes an RNA-binding protein and is expressed during mouse spermatogenesis
J. Cell Sci., July 15, 2004; 117(16): 3691 - 3702.
[Abstract] [Full Text] [PDF]

T. Tanaka, B. L. Dancheck, L. C. Trifiletti, R. E. Birnkrant, B. J. Taylor, S. H. Garfield, U. Thorgeirsson, and L. M. De Luca
Altered Localization of Retinoid X Receptor {alpha} Coincides with Loss of Retinoid Responsiveness in Human Breast Cancer MDA-MB-231 Cells
Mol. Cell. Biol., May 1, 2004; 24(9): 3972 - 3982.
[Abstract] [Full Text] [PDF]

J. Eilbracht, M. Reichenzeller, M. Hergt, M. Schnolzer, H. Heid, M. Stohr, W. W. Franke, and M. S. Schmidt-Zachmann
NO66, a Highly Conserved Dual Location Protein in the Nucleolus and in a Special Type of Synchronously Replicating Chromatin
Mol. Biol. Cell, April 1, 2004; 15(4): 1816 - 1832.
[Abstract] [Full Text] [PDF]

Z. Muresan and V. Muresan
A phosphorylated, carboxy-terminal fragment of {beta}-amyloid precursor protein localizes to the splicing factor compartment
Hum. Mol. Genet., March 1, 2004; 13(5): 475 - 488.
[Abstract] [Full Text] [PDF]

E. Sakashita, S. Tatsumi, D. Werner, H. Endo, and A. Mayeda
Human RNPS1 and Its Associated Factors: a Versatile Alternative Pre-mRNA Splicing Regulator In Vivo
Mol. Cell. Biol., February 1, 2004; 24(3): 1174 - 1187.
[Abstract] [Full Text] [PDF]

A. Herrmann, U. Sommer, A. L. Pranada, B. Giese, A. Kuster, S. Haan, W. Becker, P. C. Heinrich, and G. Muller-Newen
STAT3 is enriched in nuclear bodies
J. Cell Sci., January 15, 2004; 117(2): 339 - 349.
[Abstract] [Full Text] [PDF]

I. Cushman, D. Stenoien, and M. S. Moore
The Dynamic Association of RCC1 with Chromatin Is Modulated by Ran-dependent Nuclear Transport
Mol. Biol. Cell, January 1, 2004; 15(1): 245 - 255.
[Abstract] [Full Text] [PDF]

A. Maya-Mendoza, R. Hernandez-Munoz, P. Gariglio, and A. Aranda-Anzaldo
Gene positional changes relative to the nuclear substructure correlate with the proliferating status of hepatocytes during liver regeneration
Nucleic Acids Res., November 1, 2003; 31(21): 6168 - 6179.
[Abstract] [Full Text] [PDF]

G. Zimowska, J. Shi, G. Munguba, M. R. Jackson, R. Alpatov, M. N. Simmons, Y. Shi, and S. P. Sugrue
Pinin/DRS/memA Interacts with SRp75, SRm300 and SRrp130 in Corneal Epithelial Cells
Invest. Ophthalmol. Vis. Sci., November 1, 2003; 44(11): 4715 - 4723.
[Abstract] [Full Text] [PDF]

Y.-Q. Zhu, Y. Lu, and X.-D. Tan
Monochloramine induces reorganization of nuclear speckles and phosphorylation of SRp30 in human colonic epithelial cells: role of protein kinase C
Am J Physiol Cell Physiol, November 1, 2003; 285(5): C1294 - C1303.
[Abstract] [Full Text] [PDF]

B. E. Aubol, S. Chakrabarti, J. Ngo, J. Shaffer, B. Nolen, X.-D. Fu, G. Ghosh, and J. A. Adams
Processive phosphorylation of alternative splicing factor/splicing factor 2
PNAS, October 28, 2003; 100(22): 12601 - 12606.
[Abstract] [Full Text] [PDF]

G. Theodoris, N. Inada, and M. Freeling
Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development
PNAS, May 27, 2003; 100(11): 6837 - 6842.
[Abstract] [Full Text] [PDF]

C. Schwerk, J. Prasad, K. Degenhardt, H. Erdjument-Bromage, E. White, P. Tempst, V. J. Kidd, J. L. Manley, J. M. Lahti, and D. Reinberg
ASAP, a Novel Protein Complex Involved in RNA Processing and Apoptosis
Mol. Cell. Biol., April 15, 2003; 23(8): 2981 - 2990.
[Abstract] [Full Text] [PDF]

Y.-M. Kim, T. Watanabe, P. B. Allen, Y.-M. Kim, S.-J. Lee, P. Greengard, A. C. Nairn, and Y.-G. Kwon
PNUTS, a Protein Phosphatase 1 (PP1) Nuclear Targeting Subunit. CHARACTERIZATION OF ITS PP1- AND RNA-BINDING DOMAINS AND REGULATION BY PHOSPHORYLATION
J. Biol. Chem., April 11, 2003; 278(16): 13819 - 13828.
[Abstract] [Full Text] [PDF]

K. V. Prasanth, P. A. Sacco-Bubulya, S. G. Prasanth, and D. L. Spector
Sequential Entry of Components of Gene Expression Machinery into Daughter Nuclei
Mol. Biol. Cell, March 1, 2003; 14(3): 1043 - 1057.
[Abstract] [Full Text] [PDF]

E. Lalli, K. Ohe, E. Latorre, M. E. Bianchi, and P. Sassone-Corsi
Sexy splicing: regulatory interplays governing sex determination from Drosophila to mammals
J. Cell Sci., February 1, 2003; 116(3): 441 - 445.
[Abstract] [Full Text] [PDF]

G. Brede, J. Solheim, and H. Prydz
PSKH1, a novel splice factor compartment-associated serine kinase
Nucleic Acids Res., December 1, 2002; 30(23): 5301 - 5309.
[Abstract] [Full Text] [PDF]

Y. Zhao, K. Goto, M. Saitoh, T. Yanase, M. Nomura, T. Okabe, R. Takayanagi, and H. Nawata
Activation Function-1 Domain of Androgen Receptor Contributes to the Interaction between Subnuclear Splicing Factor Compartment and Nuclear Receptor Compartment. IDENTIFICATION OF THE p102 U5 SMALL NUCLEAR RIBONUCLEOPROTEIN PARTICLE-BINDING PROTEIN AS A COACTIVATOR FOR THE RECEPTOR
J. Biol. Chem., August 9, 2002; 277(33): 30031 - 30039.
[Abstract] [Full Text] [PDF]

M. Lafarga, M. T. Berciano, E. Pena, I. Mayo, J. G. Castano, D. Bohmann, J. P. Rodrigues, J. P. Tavanez, and M. Carmo-Fonseca
Clastosome: A Subtype of Nuclear Body Enriched in 19S and 20S Proteasomes, Ubiquitin, and Protein Substrates of Proteasome
Mol. Biol. Cell, August 1, 2002; 13(8): 2771 - 2782.
[Abstract] [Full Text] [PDF]

R. Daoud, G. Mies, A. Smialowska, L. Olah, K.-A. Hossmann, and S. Stamm
Ischemia Induces a Translocation of the Splicing Factor tra2-beta 1 and Changes Alternative Splicing Patterns in the Brain
J. Neurosci., July 15, 2002; 22(14): 5889 - 5899.
[Abstract] [Full Text] [PDF]

T. K. Chatterjee and R. A. Fisher
RGS12TS-S Localizes at Nuclear Matrix-Associated Subnuclear Structures and Represses Transcription: Structural Requirements for Subnuclear Targeting and Transcriptional Repression
Mol. Cell. Biol., June 15, 2002; 22(12): 4334 - 4345.
[Abstract] [Full Text]

				P. Liu, A. L. Greenleaf, and J. W. Stiller The Essential Sequence Elements Required for RNAP II Carboxyl-terminal Domain Function in Yeast and Their Evolutionary Conservation Mol. Biol. Evol., April 1, 2008; 25(4): 719 - 727. [Abstract] [Full Text] [PDF]

				J.-i. Yomoda, M. Muraki, N. Kataoka, T. Hosoya, M. Suzuki, M. Hagiwara, and H. Kimura Combination of Clk family kinase and SRp75 modulates alternative splicing of Adenovirus E1A. Genes Cells, March 1, 2008; 13(3): 233 - 244. [Abstract] [Full Text] [PDF]

				M. Sone, T. Hayashi, H. Tarui, K. Agata, M. Takeichi, and S. Nakagawa The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons J. Cell Sci., August 1, 2007; 120(15): 2498 - 2506. [Abstract] [Full Text] [PDF]

				A. Campalans, R. Amouroux, A. Bravard, B. Epe, and J. P. Radicella UVA irradiation induces relocalisation of the DNA repair protein hOGG1 to nuclear speckles J. Cell Sci., January 1, 2007; 120(1): 23 - 32. [Abstract] [Full Text] [PDF]

				V. Tillemans, I. Leponce, G. Rausin, L. Dispa, and P. Motte Insights into Nuclear Organization in Plants as Revealed by the Dynamic Distribution of Arabidopsis SR Splicing Factors PLANT CELL, November 1, 2006; 18(11): 3218 - 3234. [Abstract] [Full Text] [PDF]

				G. S. Ali and A. S. N. Reddy ATP, phosphorylation and transcription regulate the mobility of plant splicing factors J. Cell Sci., September 1, 2006; 119(17): 3527 - 3538. [Abstract] [Full Text] [PDF]

				I. Szivak, N. Lamb, and L. M. G. Heilmeyer Subcellular Localization and Structural Function of Endogenous Phosphorylated Phosphatidylinositol 4-Kinase (PI4K92) J. Biol. Chem., June 16, 2006; 281(24): 16740 - 16749. [Abstract] [Full Text] [PDF]

				J. R. Sanford, J. D. Ellis, D. Cazalla, and J. F. Caceres Reversible phosphorylation differentially affects nuclear and cytoplasmic functions of splicing factor 2/alternative splicing factor PNAS, October 18, 2005; 102(42): 15042 - 15047. [Abstract] [Full Text] [PDF]

				Y. Fukamatsu, S. Mitsui, M. Yasuhara, Y. Tokioka, N. Ihara, S. Fujita, and T. Kiyosue Identification of LOV KELCH PROTEIN2 (LKP2)-interacting Factors That Can Recruit LKP2 to Nuclear Bodies Plant Cell Physiol., August 1, 2005; 46(8): 1340 - 1349. [Abstract] [Full Text] [PDF]

				N. Angelier, M. Tramier, E. Louvet, M. Coppey-Moisan, T. M. Savino, J. R. De Mey, and D. Hernandez-Verdun Tracking the Interactions of rRNA Processing Proteins during Nucleolar Assembly in Living Cells Mol. Biol. Cell, June 1, 2005; 16(6): 2862 - 2871. [Abstract] [Full Text] [PDF]

				J. H. Trembley, S. Tatsumi, E. Sakashita, P. Loyer, C. A. Slaughter, H. Suzuki, H. Endo, V. J. Kidd, and A. Mayeda Activation of Pre-mRNA Splicing by Human RNPS1 Is Regulated by CK2 Phosphorylation Mol. Cell. Biol., February 15, 2005; 25(4): 1446 - 1457. [Abstract] [Full Text] [PDF]

				K. Tominaga, Y. Johmura, M. Nishizuka, and M. Imagawa Fad24, a mammalian homolog of Noc3p, is a positive regulator in adipocyte differentiation J. Cell Sci., December 1, 2004; 117(25): 6217 - 6226. [Abstract] [Full Text] [PDF]

				A. Anyanful, K. Ono, R. C. Johnsen, H. Ly, V. Jensen, D. L. Baillie, and S. Ono The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans J. Cell Biol., November 22, 2004; 167(4): 639 - 647. [Abstract] [Full Text] [PDF]

				J. Vecerova, K. Koberna, J. Malinsky, E. Soutoglou, T. Sullivan, C. L. Stewart, I. Raska, and T. Misteli Formation of Nuclear Splicing Factor Compartments Is Independent of Lamins A/C Mol. Biol. Cell, November 1, 2004; 15(11): 4904 - 4910. [Abstract] [Full Text] [PDF]

				S. K. Zaidi, D. W. Young, J.-Y. Choi, J. Pratap, A. Javed, M. Montecino, J. L. Stein, J. B. Lian, A. J. van Wijnen, and G. S. Stein Intranuclear Trafficking: Organization and Assembly of Regulatory Machinery for Combinatorial Biological Control J. Biol. Chem., October 15, 2004; 279(42): 43363 - 43366. [Abstract] [Full Text] [PDF]

				Z. J. Lorkovic, S. Lopato, M. Pexa, R. Lehner, and A. Barta Interactions of Arabidopsis RS Domain Containing Cyclophilins with SR Proteins and U1 and U11 Small Nuclear Ribonucleoprotein-specific Proteins Suggest Their Involvement in Pre-mRNA Splicing J. Biol. Chem., August 6, 2004; 279(32): 33890 - 33898. [Abstract] [Full Text] [PDF]

				N. Saitoh, C. S. Spahr, S. D. Patterson, P. Bubulya, A. F. Neuwald, and D. L. Spector Proteomic Analysis of Interchromatin Granule Clusters Mol. Biol. Cell, August 1, 2004; 15(8): 3876 - 3890. [Abstract] [Full Text] [PDF]

				G. Pinon-Lataillade, C. Masson, J. Bernardino-Sgherri, V. Henriot, P. Mauffrey, Y. Frobert, S. Araneda, and J. F. Angulo KIN17 encodes an RNA-binding protein and is expressed during mouse spermatogenesis J. Cell Sci., July 15, 2004; 117(16): 3691 - 3702. [Abstract] [Full Text] [PDF]

				T. Tanaka, B. L. Dancheck, L. C. Trifiletti, R. E. Birnkrant, B. J. Taylor, S. H. Garfield, U. Thorgeirsson, and L. M. De Luca Altered Localization of Retinoid X Receptor {alpha} Coincides with Loss of Retinoid Responsiveness in Human Breast Cancer MDA-MB-231 Cells Mol. Cell. Biol., May 1, 2004; 24(9): 3972 - 3982. [Abstract] [Full Text] [PDF]

				J. Eilbracht, M. Reichenzeller, M. Hergt, M. Schnolzer, H. Heid, M. Stohr, W. W. Franke, and M. S. Schmidt-Zachmann NO66, a Highly Conserved Dual Location Protein in the Nucleolus and in a Special Type of Synchronously Replicating Chromatin Mol. Biol. Cell, April 1, 2004; 15(4): 1816 - 1832. [Abstract] [Full Text] [PDF]

				Z. Muresan and V. Muresan A phosphorylated, carboxy-terminal fragment of {beta}-amyloid precursor protein localizes to the splicing factor compartment Hum. Mol. Genet., March 1, 2004; 13(5): 475 - 488. [Abstract] [Full Text] [PDF]

				E. Sakashita, S. Tatsumi, D. Werner, H. Endo, and A. Mayeda Human RNPS1 and Its Associated Factors: a Versatile Alternative Pre-mRNA Splicing Regulator In Vivo Mol. Cell. Biol., February 1, 2004; 24(3): 1174 - 1187. [Abstract] [Full Text] [PDF]

				A. Herrmann, U. Sommer, A. L. Pranada, B. Giese, A. Kuster, S. Haan, W. Becker, P. C. Heinrich, and G. Muller-Newen STAT3 is enriched in nuclear bodies J. Cell Sci., January 15, 2004; 117(2): 339 - 349. [Abstract] [Full Text] [PDF]

				I. Cushman, D. Stenoien, and M. S. Moore The Dynamic Association of RCC1 with Chromatin Is Modulated by Ran-dependent Nuclear Transport Mol. Biol. Cell, January 1, 2004; 15(1): 245 - 255. [Abstract] [Full Text] [PDF]

				A. Maya-Mendoza, R. Hernandez-Munoz, P. Gariglio, and A. Aranda-Anzaldo Gene positional changes relative to the nuclear substructure correlate with the proliferating status of hepatocytes during liver regeneration Nucleic Acids Res., November 1, 2003; 31(21): 6168 - 6179. [Abstract] [Full Text] [PDF]

				G. Zimowska, J. Shi, G. Munguba, M. R. Jackson, R. Alpatov, M. N. Simmons, Y. Shi, and S. P. Sugrue Pinin/DRS/memA Interacts with SRp75, SRm300 and SRrp130 in Corneal Epithelial Cells Invest. Ophthalmol. Vis. Sci., November 1, 2003; 44(11): 4715 - 4723. [Abstract] [Full Text] [PDF]

				Y.-Q. Zhu, Y. Lu, and X.-D. Tan Monochloramine induces reorganization of nuclear speckles and phosphorylation of SRp30 in human colonic epithelial cells: role of protein kinase C Am J Physiol Cell Physiol, November 1, 2003; 285(5): C1294 - C1303. [Abstract] [Full Text] [PDF]

				B. E. Aubol, S. Chakrabarti, J. Ngo, J. Shaffer, B. Nolen, X.-D. Fu, G. Ghosh, and J. A. Adams Processive phosphorylation of alternative splicing factor/splicing factor 2 PNAS, October 28, 2003; 100(22): 12601 - 12606. [Abstract] [Full Text] [PDF]

				G. Theodoris, N. Inada, and M. Freeling Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development PNAS, May 27, 2003; 100(11): 6837 - 6842. [Abstract] [Full Text] [PDF]

				C. Schwerk, J. Prasad, K. Degenhardt, H. Erdjument-Bromage, E. White, P. Tempst, V. J. Kidd, J. L. Manley, J. M. Lahti, and D. Reinberg ASAP, a Novel Protein Complex Involved in RNA Processing and Apoptosis Mol. Cell. Biol., April 15, 2003; 23(8): 2981 - 2990. [Abstract] [Full Text] [PDF]