SH3 domains: complexity in moderation

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Inhibition of Mitogen-Elicited Signal Transduction and Growth in Prostate Cancer with a Small Peptide Derived from the Functional Domain of DOC-2/DAB2 Delivered by a Unique Vehicle.
Cancer Res., September 15, 2006; 66(18): 8954 - 8958.
[Abstract] [Full Text] [PDF]

K. Ma, J. G. Forbes, G. Gutierrez-Cruz, and K. Wang
Titin as a Giant Scaffold for Integrating Stress and Src Homology Domain 3-mediated Signaling Pathways: THE CLUSTERING OF NOVEL OVERLAP LIGAND MOTIFS IN THE ELASTIC PEVK SEGMENT
J. Biol. Chem., September 15, 2006; 281(37): 27539 - 27556.
[Abstract] [Full Text] [PDF]

J. L. Morrison, R. Breitling, D. J. Higham, and D. R. Gilbert
A lock-and-key model for protein-protein interactions
Bioinformatics, August 15, 2006; 22(16): 2012 - 2019.
[Abstract] [Full Text] [PDF]

E. Song, S. Gao, R. Tian, S. Ma, H. Huang, J. Guo, Y. Li, L. Zhang, and Y. Gao
A High Efficiency Strategy for Binding Property Characterization of Peptide-binding Domains
Mol. Cell. Proteomics, August 1, 2006; 5(8): 1368 - 1381.
[Abstract] [Full Text] [PDF]

M. R. Schiller, K. Chakrabarti, G. F. King, N. I. Schiller, B. A. Eipper, and M. W. Maciejewski
Regulation of RhoGEF Activity by Intramolecular and Intermolecular SH3 Domain Interactions
J. Biol. Chem., July 7, 2006; 281(27): 18774 - 18786.
[Abstract] [Full Text] [PDF]

L. Zhang, C. Shao, D. Zheng, and Y. Gao
An Integrated Machine Learning System to Computationally Screen Protein Databases for Protein Binding Peptide Ligands
Mol. Cell. Proteomics, July 1, 2006; 5(7): 1224 - 1232.
[Abstract] [Full Text] [PDF]

J. S. Duke-Cohan, H. Kang, H. Liu, and C. E. Rudd
Regulation and Function of SKAP-55 Non-canonical Motif Binding to the SH3c Domain of Adhesion and Degranulation-promoting Adaptor Protein
J. Biol. Chem., May 12, 2006; 281(19): 13743 - 13750.
[Abstract] [Full Text] [PDF]

S. Hashimoto, M. Hirose, A. Hashimoto, M. Morishige, A. Yamada, H. Hosaka, K.-i. Akagi, E. Ogawa, C. Oneyama, T. Agatsuma, et al.
Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis
PNAS, May 2, 2006; 103(18): 7036 - 7041.
[Abstract] [Full Text] [PDF]

Y. Liang and B. Roizman
State and role of SRC family kinases in replication of herpes simplex virus 1.
J. Virol., April 1, 2006; 80(7): 3349 - 3359.
[Abstract] [Full Text] [PDF]

J. Z. Lu, T. Fujiwara, H. Komatsuzawa, M. Sugai, and J. Sakon
Cell Wall-targeting Domain of Glycylglycine Endopeptidase Distinguishes among Peptidoglycan Cross-bridges
J. Biol. Chem., January 6, 2006; 281(1): 549 - 558.
[Abstract] [Full Text] [PDF]

N. Meller, S. Merlot, and C. Guda
CZH proteins: a new family of Rho-GEFs
J. Cell Sci., November 1, 2005; 118(21): 4937 - 4946.
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K. Bhaskar, S.-H. Yen, and G. Lee
Disease-related Modifications in Tau Affect the Interaction between Fyn and Tau
J. Biol. Chem., October 21, 2005; 280(42): 35119 - 35125.
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C. M. Louie and J. G. Gleeson
Genetic basis of Joubert syndrome and related disorders of cerebellar development
Hum. Mol. Genet., October 15, 2005; 14(suppl_2): R235 - R242.
[Abstract] [Full Text] [PDF]

M. Ralser, U. Nonhoff, M. Albrecht, T. Lengauer, E. E. Wanker, H. Lehrach, and S. Krobitsch
Ataxin-2 and huntingtin interact with endophilin-A complexes to function in plastin-associated pathways
Hum. Mol. Genet., October 1, 2005; 14(19): 2893 - 2909.
[Abstract] [Full Text] [PDF]

A. S. McElhinny, C. Schwach, M. Valichnac, S. Mount-Patrick, and C. C. Gregorio
Nebulin regulates the assembly and lengths of the thin filaments in striated muscle
J. Cell Biol., September 12, 2005; 170(6): 947 - 957.
[Abstract] [Full Text] [PDF]

C. Y. H. Jia, J. Nie, C. Wu, C. Li, and S. S.-C. Li
Novel Src Homology 3 Domain-binding Motifs Identified from Proteomic Screen of a Pro-rich Region
Mol. Cell. Proteomics, August 1, 2005; 4(8): 1155 - 1166.
[Abstract] [Full Text] [PDF]

E. Solomaha, F. L. Szeto, M. A. Yousef, and H. C. Palfrey
Kinetics of Src Homology 3 Domain Association with the Proline-rich Domain of Dynamins: SPECIFICITY, OCCLUSION, AND THE EFFECTS OF PHOSPHORYLATION
J. Biol. Chem., June 17, 2005; 280(24): 23147 - 23156.
[Abstract] [Full Text] [PDF]

H. Friesen, K. Colwill, K. Robertson, O. Schub, and B. Andrews
Interaction of the Saccharomyces cerevisiae Cortical Actin Patch Protein Rvs167p With Proteins Involved in ER to Golgi Vesicle Trafficking
Genetics, June 1, 2005; 170(2): 555 - 568.
[Abstract] [Full Text] [PDF]

K. Okada, S. Kanaya, and K. Asai
Accurate extraction of functional associations between proteins based on common interaction partners and common domains
Bioinformatics, May 1, 2005; 21(9): 2043 - 2048.
[Abstract] [Full Text] [PDF]

E. J. Chenette, A. Abo, and C. J. Der
Critical and Distinct Roles of Amino- and Carboxyl-terminal Sequences in Regulation of the Biological Activity of the Chp Atypical Rho GTPase
J. Biol. Chem., April 8, 2005; 280(14): 13784 - 13792.
[Abstract] [Full Text] [PDF]

A. Macdonald, S. Mazaleyrat, C. McCormick, A. Street, N. J. Burgoyne, R. M. Jackson, V. Cazeaux, H. Shelton, K. Saksela, and M. Harris
Further studies on hepatitis C virus NS5A-SH3 domain interactions: identification of residues critical for binding and implications for viral RNA replication and modulation of cell signalling
J. Gen. Virol., April 1, 2005; 86(4): 1035 - 1044.
[Abstract] [Full Text] [PDF]

M. J. Winters and P. M. Pryciak
Interaction with the SH3 Domain Protein Bem1 Regulates Signaling by the Saccharomyces cerevisiae p21-Activated Kinase Ste20
Mol. Cell. Biol., March 15, 2005; 25(6): 2177 - 2190.
[Abstract] [Full Text] [PDF]

R.M. Touyz, G. Yao, M.T. Quinn, P.J. Pagano, and E.L. Schiffrin
p47phox Associates With the Cytoskeleton Through Cortactin in Human Vascular Smooth Muscle Cells: Role in NAD(P)H Oxidase Regulation by Angiotensin II
Arterioscler. Thromb. Vasc. Biol., March 1, 2005; 25(3): 512 - 518.
[Abstract] [Full Text] [PDF]

				M. Rovedo and R. Longnecker Epstein-Barr Virus Latent Membrane Protein 2A Preferentially Signals through the Src Family Kinase Lyn J. Virol., September 1, 2008; 82(17): 8520 - 8528. [Abstract] [Full Text] [PDF]

				S. K. Kang, Y. K. Chae, J. Woo, M. S. Kim, J. C. Park, J. Lee, J. C. Soria, S. J. Jang, D. Sidransky, and C. Moon Role of Human Aquaporin 5 In Colorectal Carcinogenesis Am. J. Pathol., August 1, 2008; 173(2): 518 - 525. [Abstract] [Full Text] [PDF]

				C. H. Reynolds, C. J. Garwood, S. Wray, C. Price, S. Kellie, T. Perera, M. Zvelebil, A. Yang, P. W. Sheppard, I. M. Varndell, et al. Phosphorylation Regulates Tau Interactions with Src Homology 3 Domains of Phosphatidylinositol 3-Kinase, Phospholipase C{gamma}1, Grb2, and Src Family Kinases J. Biol. Chem., June 27, 2008; 283(26): 18177 - 18186. [Abstract] [Full Text] [PDF]

				K. Haberg, R. Lundmark, and S. R. Carlsson SNX18 is an SNX9 paralog that acts as a membrane tubulator in AP-1-positive endosomal trafficking J. Cell Sci., May 1, 2008; 121(9): 1495 - 1505. [Abstract] [Full Text] [PDF]

				J. Guo, X. Wu, D.-Y. Zhang, and K. Lin Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset Nucleic Acids Res., April 1, 2008; 36(6): 2002 - 2011. [Abstract] [Full Text] [PDF]

				I. Y. Churbanova and I. F. Sevrioukova Redox-dependent Changes in Molecular Properties of Mitochondrial Apoptosis-inducing Factor J. Biol. Chem., February 29, 2008; 283(9): 5622 - 5631. [Abstract] [Full Text] [PDF]

				P. M. Benz, C. Blume, J. Moebius, C. Oschatz, K. Schuh, A. Sickmann, U. Walter, S. M. Feller, and T. Renne Cytoskeleton assembly at endothelial cell cell contacts is regulated by {alpha}II-spectrin VASP complexes J. Cell Biol., January 10, 2008; 180(1): 205 - 219. [Abstract] [Full Text] [PDF]

				Y. Zhou, W. Yang, M. M. Lurtz, Y. Ye, Y. Huang, H.-W. Lee, Y. Chen, C. F. Louis, and J. J. Yang Identification of the Calmodulin Binding Domain of Connexin 43 J. Biol. Chem., November 30, 2007; 282(48): 35005 - 35017. [Abstract] [Full Text] [PDF]

				D. E. Shvartsman, J. C. Donaldson, B. Diaz, O. Gutman, G. S. Martin, and Y. I. Henis Src kinase activity and SH2 domain regulate the dynamics of Src association with lipid and protein targets J. Cell Biol., August 9, 2007; 178(4): 675 - 686. [Abstract] [Full Text] [PDF]

				S. Z. Imam, F. E. Indig, W.-H. Cheng, S. P. Saxena, T. Stevnsner, D. Kufe, and V. A. Bohr Cockayne syndrome protein B interacts with and is phosphorylated by c-Abl tyrosine kinase Nucleic Acids Res., August 1, 2007; 35(15): 4941 - 4951. [Abstract] [Full Text] [PDF]

				E. Ferraro, D. Peluso, A. Via, G. Ausiello, and M. Helmer-Citterich SH3-Hunter: discovery of SH3 domain interaction sites in proteins Nucleic Acids Res., July 13, 2007; 35(suppl_2): W451 - W454. [Abstract] [Full Text] [PDF]

				V. De Filippis, A. Draghi, R. Frasson, C. Grandi, V. Musi, A. Fontana, and A. Pastore o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes Protein Sci., July 1, 2007; 16(7): 1257 - 1265. [Abstract] [Full Text] [PDF]

				J. Haynes, B. Garcia, E. J. Stollar, A. Rath, B. J. Andrews, and A. R. Davidson The Biologically Relevant Targets and Binding Affinity Requirements for the Function of the Yeast Actin-Binding Protein 1 Src-Homology 3 Domain Vary With Genetic Context Genetics, May 1, 2007; 176(1): 193 - 208. [Abstract] [Full Text] [PDF]

				K.-J. Hwang, F. Mahmoodian, J. A. Ferretti, E. D. Korn, and J. M. Gruschus Intramolecular interaction in the tail of Acanthamoeba myosin IC between the SH3 domain and a putative pleckstrin homology domain PNAS, January 16, 2007; 104(3): 784 - 789. [Abstract] [Full Text] [PDF]

				G. Moncalian, N. Cardenes, Y. L. Deribe, M. Spinola-Amilibia, I. Dikic, and J. Bravo Atypical Polyproline Recognition by the CMS N-terminal Src Homology 3 Domain J. Biol. Chem., December 15, 2006; 281(50): 38845 - 38853. [Abstract] [Full Text] [PDF]

				L. Tian, L. Chen, H. McClafferty, C. A. Sailer, P. Ruth, H.-G. Knaus, and M. J. Shipston A noncanonical SH3 domain binding motif links BK channels to the actin cytoskeleton via the SH3 adapter cortactin FASEB J, December 1, 2006; 20(14): 2588 - 2590. [Abstract] [Full Text] [PDF]

				C. Mazzochi, D. J. Benos, and P. R. Smith Interaction of epithelial ion channels with the actin-based cytoskeleton Am J Physiol Renal Physiol, December 1, 2006; 291(6): F1113 - F1122. [Abstract] [Full Text] [PDF]

				D. D. Weis, P. Kjellen, B. M. Sefton, and J. R. Engen Altered dynamics in Lck SH3 upon binding to the LBD1 domain of Herpesvirus saimiri Tip. Protein Sci., October 1, 2006; 15(10): 2402 - 2410. [Abstract] [Full Text] [PDF]

				P. Knechtle, J. Wendland, and P. Philippsen The SH3/PH Domain Protein AgBoi1/2 Collaborates with the Rho-Type GTPase AgRho3 To Prevent Nonpolar Growth at Hyphal Tips of Ashbya gossypii Eukaryot. Cell, October 1, 2006; 5(10): 1635 - 1647. [Abstract] [Full Text] [PDF]

				E. Ferraro, A. Via, G. Ausiello, and M. Helmer-Citterich A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity Bioinformatics, October 1, 2006; 22(19): 2333 - 2339. [Abstract] [Full Text] [PDF]

				H. Konishi, K. Tashiro, Y. Murata, H. Nabeshi, E. Yamauchi, and H. Taniguchi CFBP Is a Novel Tyrosine-phosphorylated Protein That Might Function as a Regulator of CIN85/CD2AP J. Biol. Chem., September 29, 2006; 281(39): 28919 - 28931. [Abstract] [Full Text] [PDF]

				X. Li, Y. Chen, Y. Liu, J. Gao, F. Gao, M. Bartlam, J. Y. Wu, and Z. Rao Structural Basis of Robo Proline-rich Motif Recognition by the srGAP1 Src Homology 3 Domain in the Slit-Robo Signaling Pathway J. Biol. Chem., September 22, 2006; 281(38): 28430 - 28437. [Abstract] [Full Text] [PDF]

				J. Zhou, J. Fan, and J.-T. Hsieh Inhibition of Mitogen-Elicited Signal Transduction and Growth in Prostate Cancer with a Small Peptide Derived from the Functional Domain of DOC-2/DAB2 Delivered by a Unique Vehicle. Cancer Res., September 15, 2006; 66(18): 8954 - 8958. [Abstract] [Full Text] [PDF]

				K. Ma, J. G. Forbes, G. Gutierrez-Cruz, and K. Wang Titin as a Giant Scaffold for Integrating Stress and Src Homology Domain 3-mediated Signaling Pathways: THE CLUSTERING OF NOVEL OVERLAP LIGAND MOTIFS IN THE ELASTIC PEVK SEGMENT J. Biol. Chem., September 15, 2006; 281(37): 27539 - 27556. [Abstract] [Full Text] [PDF]

				J. L. Morrison, R. Breitling, D. J. Higham, and D. R. Gilbert A lock-and-key model for protein-protein interactions Bioinformatics, August 15, 2006; 22(16): 2012 - 2019. [Abstract] [Full Text] [PDF]

				E. Song, S. Gao, R. Tian, S. Ma, H. Huang, J. Guo, Y. Li, L. Zhang, and Y. Gao A High Efficiency Strategy for Binding Property Characterization of Peptide-binding Domains Mol. Cell. Proteomics, August 1, 2006; 5(8): 1368 - 1381. [Abstract] [Full Text] [PDF]

				M. R. Schiller, K. Chakrabarti, G. F. King, N. I. Schiller, B. A. Eipper, and M. W. Maciejewski Regulation of RhoGEF Activity by Intramolecular and Intermolecular SH3 Domain Interactions J. Biol. Chem., July 7, 2006; 281(27): 18774 - 18786. [Abstract] [Full Text] [PDF]

				L. Zhang, C. Shao, D. Zheng, and Y. Gao An Integrated Machine Learning System to Computationally Screen Protein Databases for Protein Binding Peptide Ligands Mol. Cell. Proteomics, July 1, 2006; 5(7): 1224 - 1232. [Abstract] [Full Text] [PDF]

				J. S. Duke-Cohan, H. Kang, H. Liu, and C. E. Rudd Regulation and Function of SKAP-55 Non-canonical Motif Binding to the SH3c Domain of Adhesion and Degranulation-promoting Adaptor Protein J. Biol. Chem., May 12, 2006; 281(19): 13743 - 13750. [Abstract] [Full Text] [PDF]

				S. Hashimoto, M. Hirose, A. Hashimoto, M. Morishige, A. Yamada, H. Hosaka, K.-i. Akagi, E. Ogawa, C. Oneyama, T. Agatsuma, et al. Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis PNAS, May 2, 2006; 103(18): 7036 - 7041. [Abstract] [Full Text] [PDF]