Mechanobiology June 26th - June 2nd 2016

Mechanobiology: June 26th  - June 2nd 2016


Retrograde transport allows proteins and lipids to leave the endocytic pathway to reach other intracellular compartments, such as trans-Golgi network (TGN)/Golgi membranes, the endoplasmic reticulum and, in some instances, the cytosol. Here, we have used RNA interference against the SNARE proteins syntaxin 5 and syntaxin 16, combined with recently developed quantitative trafficking assays, morphological approaches and cell intoxication analysis to show that these SNARE proteins are not only required for efficient retrograde transport of Shiga toxin, but also for that of an endogenous cargo protein – the mannose 6-phosphate receptor – and for the productive trafficking into cells of cholera toxin and ricin. We have found that the function of syntaxin 16 was specifically required for, and restricted to, the retrograde pathway. Strikingly, syntaxin 5 RNA interference protected cells particularly strongly against Shiga toxin. Since our trafficking analysis showed that apart from inhibiting retrograde endosome-to-TGN transport, the silencing of syntaxin 5 had no additional effect on Shiga toxin endocytosis or trafficking from TGN/Golgi membranes to the endoplasmic reticulum, we hypothesize that syntaxin 5 also has trafficking-independent functions. In summary, our data demonstrate that several cellular and exogenous cargo proteins use elements of the same SNARE machinery for efficient retrograde transport between early/recycling endosomes and TGN/Golgi membranes.


Shiga toxin (STx), produced by Shigella dysenteriae, and the virtually identical Shiga-like toxins (SLTx) from enterohemorrhagic strains of Escherichia coli, are A-B toxins, in which a catalytically active A-subunit interacts with, in this case, five receptor-binding B-fragments forming the homo-pentameric B-subunit (STxB). The A-subunits of these toxins have N-glycanase activity that inhibits protein synthesis through a specific depurination of the large ribosomal RNA (Endo et al., 1988). STx is associated with bacillary dysentery whereas the SLTx proteins have a role in the pathological manifestations of hemorrhagic colitis and haemolytic uremic syndrome, a leading causes for pediatric renal failure (Peacock et al., 2001). Other members of the A-B protein toxin family include cholera toxin (CTx), ricin, E. coli heat-labile enterotoxin, and Pseudomonas exotoxin A, which, like STx/SLTx, reach their cytosolic targets by retrotranslocation from the lumen of the endoplasmic reticulum (ER) (Lord et al., 2003).

STxB is responsible for high-affinity binding to the toxin's cell surface receptor globotriaosyl ceramide (Gb3/CD77) (Lingwood, 1993), and for subsequent internalization. From early endosomes/recycling endosomes (EEs/REs), STxB has been described to leave the endocytic pathway (Mallard et al., 1998) and to be targeted to the ER (Johannes et al., 1997; Sandvig et al., 1992) via the Golgi complex (for reviews, see Johannes and Decaudin, 2005; Sandvig et al., 2004; Smith et al., 2004). For reasons such as the abundance of its cellular receptor and the possibility to synchronize its cellular uptake at the plasma membrane and the EE/RE, STxB has turned out to be a suitable marker for studying retrograde transport, and innovative quantitative and morphological tools have been developed to this end (reviewed in Amessou et al., 2007; Mallard and Johannes, 2003; Tai et al., 2005).

The molecular machinery underlying the newly described transport step from the EE/RE to the trans-Golgi network (TGN) is currently being identified. Retrograde sorting of STxB from EE/RE depends on clathrin (Lauvrak et al., 2004; Saint-Pol et al., 2004) and the putative clathrin adaptor epsinR (Saint-Pol et al., 2004). It also involves membrane microdomain organization (Falguières et al., 2001) and GPP130 (Natarajan and Linstedt, 2004), a Golgi protein of unknown function. Targeting and fusion of EE/RE-derived, STxB-containing transport intermediates with Golgi/TGN membranes is regulated by the small GTPase Rab6a', the putative TGN tethering molecule golgin-97 (Lu et al., 2004), and by two soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor (SNARE) complexes that include the heavy-chain tSNAREs syntaxin 16 (Mallard et al., 2002) and syntaxin 5 (Tai et al., 2004).

SNAREs are trans-membrane proteins that are essential for membrane fusion and that contribute to the specificity of this process (Chen and Scheller, 2001; Jahn and Grubmuller, 2002; Pelham and Rothman, 2000). These functions are driven by a specific pairing of four coiled-coil domains contributed by a VAMP (vesicle or R-SNARE), a syntaxin (target or Qa SNARE) and one or two proteins that contribute two coiled-coils (Qb-Qc SNAREs). Several SNARE proteins have been described that can be found within Golgi membranes (Chen and Scheller, 2001). These include five syntaxins: syntaxin 5 (Bennett et al., 1993; Hay et al., 1998), syntaxin 6 (Bock et al., 1996), syntaxin 10 (Tang et al., 1998b), syntaxin 11 (Valdez et al., 1999) and syntaxin 16 (Tang et al., 1998a). The two syntaxins involved in retrograde transport to the TGN – syntaxin 5 (Syn5) and syntaxin 16 (Syn16) – are found in different SNARE complexes: Syn16 associates with syntaxin 6 and Vti1a to form a tSNARE complex at the TGN whose physical and functional interaction with the endosomal vSNARE VAMP4 and – to a lesser extent – with VAMP3, regulates retrograde transport (Mallard et al., 2002). Syn5 has been described in two different molecular environments, one as part of a Syn5-GS27-Sec22-Bet1 complex at the cis-Golgi–ER interface (Hay et al., 1998), and the other as a component of a Syn5-GS28-Ykt6-GS15 complex on Golgi membranes (Hay et al., 1998; Xu et al., 2002). The latter complex has been ascribed a role in retrograde transport to the TGN (Tai et al., 2004).

The discovery of at least two SNARE complexes that are involved in retrograde transport at the EE/RE-TGN interface raises a number of questions, including whether these complexes have cargo-specific functions. It has already been shown that Syn16 function is required for the retrograde trafficking of STxB, the cellular protein TGN38/46 of unknown function, and the mannose 6-phosphate receptor (MPR), which shuttles lysosomal enzymes between TGN and endosomes/lysosomes (Mallard et al., 2002; Saint-Pol et al., 2004). Syn5 functions in the retrograde trafficking of STxB (Tai et al., 2004). In the comparative study here, we have chosen to inhibit Syn5 and Syn16 functions in HeLa cells by RNA interference (RNAi) to silence their expression. Using protein sulfation methodology (Amessou et al., 2007; Mallard and Johannes, 2003) in combination with cell intoxication assays and immunofluorescence, we have analyzed the retrograde traffic of the endogenous cargo protein MPR, and three exogenous cargoes, STxB, cholera toxin B-subunit (CTxB) and ricin, under RNAi conditions. We report that the intracellular transport of all these proteins was similarly sensitive to an interference with Syn5 and Syn16 expression. In the case of Syn16, the RNAi effect was highly selective for retrograde transport in that transferrin recycling, transport and degradation of epidermal growth factor (EGF) in lysosomes, and biosynthetic/secretory VSV-G transport to the plasma membrane were not affected. Surprisingly, when cytotoxicity rather than retrograde transport was monitored, we discovered that RNAi targeting Syn5 disrupted intoxication most strikingly when cells were challenged with STx. RNAi against a further member of the Golgi/TGN Syn5 SNARE complex, GS15, did not produce this strong protective phenotpye. These observations suggest that knockdown of Syn5 levels limits the activity of a STx-specific factor required not for transport, but in a downstream step following initial delivery of this toxin into the ER lumen. Apart from this difference, it is clear from our study that several exogenous and endogenous markers share the same SNARE machinery for efficient retrograde transport from endosomes to Golgi/TGN membranes.


Specific inhibition of retrograde transport of STxB in Syn16 RNAi conditions

Our previous studies have implicated Syn16 in retrograde transport to the TGN as part of a soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor (SNARE) complex composed of Syn16, syntaxin 6, Vti1a, and the vSNAREs VAMP4 or VAMP3 (Mallard et al., 2002). However, in this earlier report, a functional requirement for Syn16 in retrograde transport was not addressed. Using RNAi, we show here that, in agreement with some recent studies (Smith et al., 2006b; Wang et al., 2005), Syn16 is indeed required. Three different small interfering RNA (siRNA) duplexes down-modulated Syn16 expression (Fig. 1A, inset). We then used sulfation analysis to quantify arrival of STxB in TGN/Golgi membranes under these conditions. This assay exploits TGN-localized sulfotransferase activity (Johannes et al., 1997; Mallard et al., 1998); detailed in Mallard and Johannes (Mallard and Johannes, 2003). Upon retrograde transport to the TGN of the sulfation site-tagged STxB variant STxB-Sulf2, tyrosyl sulfotransferase catalyzes addition of radioactive sulfate, and following immunoprecipitation, sulfated STxB-Sulf2 is detected and quantified by electrophoresis and autoradiography. Transfection of the three anti-Syn16 siRNAs led in all cases to an inhibition of retrograde transport, when compared to mock (set to 100%) or scrambled siRNA-transfected control cells (Fig. 1A). The specificity of the RNAi effect was further demonstrated by showing a dose-dependency of retrograde transport inhibition, using siRNA sequence 3 (Fig. 1B).

Immunofluorescence analysis was used to analyze the site of STxB accumulation in Syn16 RNAi cells. In control cells (Fig. 1C), STxB (green) was efficiently transported to TGN/Golgi membranes and colocalized with the Golgi cisternal marker CTR433 (red). In the same cells, immunolabeled Syn16 (blue) was readily detected in co-distribution with CTR433. By contrast, in siRNA-transfected cells (Fig. 1D,E), the Syn16 signal (blue) was clearly decreased. STxB (green) was detectable in peripheral structures that were also positive for the transferrin receptor (TfR; red, Fig. 1E), a marker of EE/RE. It was noticeable that in Syn16 RNAi cells, STxB (green) also remained concentrated in a perinuclear localization close to the Golgi complex (CTR433; red, Fig. 1D). Whether STxB was actually in Golgi cisternae, because of incomplete inhibition of retrograde transport, or whether it accumulated close to Golgi cisternae could not be distinguished at this level of resolution. Of note, in Syn16 RNAi cells, was the perinuclear localization of TfR, something normally not evident in HeLa cells (Lin et al., 2002). In addition, in some cells, TfR-positive tubules emanated from the perinuclear site, which also contained STxB (Fig. 1E).

We tested the specificity of the Syn16 RNAi effect on retrograde transport using three markers that traffic through organelles constituting the EE/RE-TGN interface. In interaction with its receptor, epidermal growth factor (EGF) is internalized by clathrin-dependent endocytosis into EE and targeted to late endosomes/lysosomes for degradation (Wiley and Burke, 2001). We found here that degradation of this protein, as measured by the appearance of acid soluble counts in the cell culture medium (Mallard et al., 1998), was largely unaffected in Syn16 RNAi cells (Fig. 1F). This suggested that trafficking through the endocytic pathway was functionally unperturbed. Next, we observed that transferrin (Tf) recycling from EE/RE back to the plasma membrane was similar in control and Syn16 RNAi cells (Fig. 1G). Finally, a model cargo, the vesicular stomatitis virus glycoprotein (VSVG), was used to assess the effect of Syn16 RNAi on anterograde trafficking along the biosynthetic/secretory pathway to the plasma membrane, via the TGN (Fig. 1H). Again, no difference in trafficking was observed. The validity of the assay was confirmed by showing that brefeldin A (BFA) could totally inhibit the transport of VSVG (Fig. 1H, right column). We also demonstrated that cell surface binding sites and apparent affinity of STxB for cells were not altered in Syn16 RNAi cells, when compared with mock-transfected control cells (Table 1). Taken together, these data demonstrate that Syn16 is specifically required for efficient retrograde STxB transport from EE/RE to the TGN.

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Table 1.

Scatchard analysis on cells in the indicated control and RNAi conditions

Fig. 1.

Specific inhibition of retrograde transport of STxB in Syn16 RNAi conditions. (A) Metabolic sulfation of internalized STxB-Sulf2 on HeLa cells over a 20-minute period was visualized by immunoprecipitation from cells that had been transfected for 72 hours with three different siRNAs against Syn16 or with scrambled (Sc) siRNA (200 nM each). Data are expressed as percentages of STxB-Sulf2 sulfation for each experimental condition, using sulfation of STxB-Sulf2 on mock-transfected cells as the reference (set to 100%), and normalized for total sulfation counts (see Materials and Methods and Fig. 2C). Inset: Western blotting confirmed the down-modulation of Syn16 under these conditions. Tubulin was used as a loading control. (B) Sulfation analysis (as in A) of STxB-Sulf2 applied to HeLa cells that had been transfected for 72 hours with increasing doses of anti-Syn16 siRNA number 3. Inset: Western blot of Syn16 under the indicated conditions. (C-E) Immunofluorescence analysis of retrograde STxB transport in (C) mock-transfected control (CTL) and (D-E) Syn16 RNAi cells (siRNA sequence number 3 at 200 nM). In all conditions fluorophore-labeled STxB (green) was internalized for 45 minutes at 37°C. Cells were fixed and labeled for Syn16 (blue), the Golgi marker CTR433 (red, D), or TfR (red, E). Under Syn16 RNAi conditions, STxB accumulation in the Golgi was reduced, and the protein appeared in peripheral structures where it co-distributed with the TfR. Bar, 10 μm. (F-H) Specificity controls for the Syn16 RNAi. (F) EGF degradation. 2.5 ng/ml of iodine-labeled EGF was incubated for the indicated times with HeLa cells in the indicated conditions. Lysosomal degradation was measured by appearance of TCA-soluble counts in the culture medium (G) Tf recycling. Biotin-tagged Tf was internalized at 37°C for 40 minutes into HeLa cells in the indicated conditions. Cells were washed and further incubated as shown at 37°C. Remaining cell-associated Tf was determined by ELISA. In F-G, the means of three to four independent experiments are shown. (H) VSVG transport in the biosynthetics/secretory pathway. The trafficking of newly synthesized VSVG-ts045 to the plasma membrane was analyzed by cell-surface biotinylation after a shift in temperature from 40°C to 32°C. BFA was used as a specificity control.

Specific function of Syn5 in the EE/RE-to-TGN transport step of the retrograde pathway

In addition to the Syn16-containing SNARE complexes (Mallard et al., 2002), Syn5 and GS15 have recently been identified as further molecular players at the EE/RE-TGN interface (Tai et al., 2004). We used siRNAs as described by Hong and colleagues (Tai et al., 2004) and developed new ones that allowed robust knock down of Syn5 and GS15 (Fig. 2A). We also showed that down-modulating Syn16 expression had no effect on Syn5, and vice versa (Fig. 2A, lower panels), suggesting that loss of one complex is not compensated by the upregulation of the other one. Monitoring sulfation, we found that Syn5 and GS15 RNAi induced a strong inhibition of retrograde transport of STxB, when compared with mock-transfected control cells (set to 100%) or scrambled siRNA-transfected cells (Fig. 2B). The levels of inhibition were similar to those observed with Syn16 RNAi (Fig. 2B). To control for specificity, we showed that RNAi targeting the late endosomal tSNARE Syn7 did not affect retrograde transport of STxB (Fig. 2B), despite efficient down-modulation of the Syn7 target protein (Fig. 2A). Similarly, interfering with the function of the TGN-localized tSNARE Syn10 did not prevent STxB from reaching TGN membranes (Wang et al., 2005). The analysis of sulfation signals on endogenous proteins revealed that these were partially affected in the Syn5 RNAi condition (Fig. 2C), suggesting that Golgi/TGN integrity was altered under these conditions. Note that the inhibition data shown in Fig. 2B were normalized to take account of the overall decrease in the endogenous sulfation capacity (see Materials and Methods).

Immunofluorescence was used to study compartment integrity and STxB accumulation sites under Syn5 RNAi conditions. In mock-transfected control cells, STxB (green) colocalized with Syn5 (blue) on CTR433-positive (red) Golgi membranes after 45 minutes of internalization into HeLa cells at 37°C (Fig. 2D). In Syn5 RNAi cells (Fig. 2E,F; low Syn5 signal, blue), STxB (green) accumulated in peripheral structures that were distinct from Golgi cisternae (Fig. 2E, red) and co-distributed with TfR (Fig. 2F, red; see inset). In these cells, we observed a variable degree of Golgi disruption (Fig. 2E, CTR433, red), as reported in another recent study (Suga et al., 2005), that probably reflects a complex role of Syn5 in membrane trafficking from and to the Golgi cisternae (Dascher et al., 1994; Hay et al., 1997; Tai et al., 2004). However, Syn5 RNAi did not appear to influence the presence of Gb3 molecules at the cell surface – as judged from Scatchard analysis, which revealed equal numbers of STxB cell surface binding sites on mock-transfected control cells and Syn5 RNAi cells (Table 1).

In the light of the endogenous sulfation phenotype (Fig. 2C) and the effect on Golgi morphology (Fig. 2E), we sought to have an independent confirmation of the inhibitory effect of Syn5 RNAi on retrograde STxB trafficking. For this, we used a previously developed N-glycosylation-site-tagged STxB variant, which becomes modified by oligosaccharyl transferase upon arrival in the ER (Johannes et al., 1997; Mallard and Johannes, 2003). When compared with mock-transfected control cells, glycosylation was inhibited under Syn5, GS15 and Syn16 RNAi conditions (Fig. 3A), strongly suggesting that retrograde arrival in the ER was delayed in all cases. Strikingly, the level of inhibition was similar in all conditions (Fig. 3A), as seen for arrival in TGN/Golgi membranes (Fig. 2B). This suggested that, of all possible retrograde transport steps, only EE/RE-to-TGN trafficking was inhibited, despite the effect on Golgi morphology, which was specific for Syn5 RNAi cells. This prediction was tested directly, as shown below.

The first step of retrograde transport to the ER is endocytosis. We showed that neither the uptake of STxB (Fig. 3B) nor that of Tf (Fig. 3C) were affected in Syn5 RNAi cells. After leaving the endosome via the EE/RE-TGN interface, STxB is then transported from TGN/Golgi membranes to the ER. We used another variant of STxB, termed STxB-Sulf-Glyc-KDEL, to analyze this transport process. Treating HeLa cells with this protein in the presence of radioactive sulfate leads to its metabolic labeling in the TGN. Thereafter, glycosylation of the sulfated STxB-Sulf-Glyc-KDEL can be measured to signify arrival in the ER. Since glycosylation analysis is a relative measure – i.e. it determines the fraction of sulfated STxB-Sulf-Glyc-KDEL that is also glycosylated – it is independent of differences in sulfation efficiency between experimental conditions and can thus report on events at the TGN/Golgi-ER interface even if the preceding EE/RE-TGN interface is affected.

Under control conditions, i.e. after 2 hours incubation of STxB-Sulf-Glyc-KDEL with mock-transfected cells in the presence of radioactive sulfate (pulse) followed by a 4-hour chase, a complex pattern of bands was observed by glycosylation analysis (Fig. 3D). The uppermost band (1) represents the glycosylation product, as judged from its electrophoretic mobility and the fact that it selectively disappeared upon tunicamycin treatment. The second band (2) corresponds to a TGN-sulfated but non-glycosylated STxB-Sulf-Glyc-KDEL. The third band (3) represents a proteolytic cleavage product of the TGN-sulfated STxB-Sulf-Glyc-KDEL still containing the glycosylation sequence. Indeed, this band became selectively intensified upon tunicamycin treatment. Bands 4-6 represent further proteolytic cleavage products on which the glycosylation sequence was removed. STxB-Sulf2 is shown on the right of Fig. 3D for comparison. We observed that the pattern of bands remained unchanged when Syn5 or GS15 expression was down-modulated by RNAi, even though all bands were weaker under Syn5 or GS15 RNAi conditions (Fig. 3D), reflecting the inhibition of EE/RE-to-TGN transport described above. Importantly, the quantitative analysis revealed that under all conditions, the same fraction of sulfated STxB-Sulf-Glyc-KDEL became glycosylated (Fig. 3E), strongly suggesting that ER entry following retrograde transport from TGN/Golgi membranes was not affected in all cases. In summary, despite a profound effect on Golgi morphology, Syn5 RNAi only led to an inhibition of EE/RE-to-TGN transport of STxB, without affecting its internalization or trafficking from TGN/Golgi membranes to the ER.

Fig. 2.

Effect of Syn5 RNAi on cell entry by STxB. (A) Western blot analysis of target-protein expression under variable RNAi conditions. Note that, for Syn5, two different isoforms of the protein were detected. Sc,scrambled. (B) Sulfation was monitored over 20 minutes following addition of STxB-Sulf2 to HeLa cells that had been transfected for 72 hours with 200 nM scrambled siRNA or siRNAs targeting the indicated proteins. For Syn5, two independent siRNA sequences were used that gave similar results. For Syn16, sequence number 3 was used. Data are expressed as percentages of STxB-Sulf2 sulfation for each experimental condition, using sulfation of STxB-Sulf2 on mock-transfected cells as the reference (set to 100%), and normalized for total sulfation counts (see C). RNAi against the late endosomal Syn7 was taken as a specificity control. Mean ± s.e.m. of three to five determinations are shown. (C) Sulfation levels on endogenous proteins under the indicated experimental conditions. (D-F) Immunofluorescence analysis of retrograde STxB transport in (D) mock-transfected control (CTL) or (E-F) Syn5 RNAi cells. In all conditions, fluorophore-labeled STxB (green) was internalized for 45 minutes at 37°C. Cells were fixed and labeled for Syn5 (blue), the (D-E) Golgi marker CTR433 (red), or (F) TfR (red). Under Syn5 RNAi conditions, STxB accumulation in the Golgi was reduced, and the protein appeared in peripheral structures where it co-distributed with TfR. Note that Golgi membranes were partly dispersed in (E) Syn5 RNAi cells, CTR433). Bar, 10 μm.

A common fusion machinery in the retrograde route of several cargo proteins

We then used the RNAi tools we had developed to find out whether the same protein machinery is used for the efficient targeting of different exogenous and endogenous cargo proteins from endosomes to TGN/Golgi membranes. To address this question, we have extended the STxB-based sulfation assay to other cargo proteins, similar to what has been described for ricin (Rapak et al., 1997). Three types of sulfation-site modifications were used (Fig. 4A). In the original configuration, a dimer of sulfation sites was genetically fused to STxB, yielding STxB-Sulf2 (Mallard et al., 1998). We have now developed a protocol for the chemical coupling of a sulfation-site peptide to CTxB or to an antibody directed against green fluorescent protein (GFP) (reviewed in Amessou et al., 2007). In the latter case, sulfation analysis is performed on HeLa cells that stably express MPR300 fused to luminal oriented GFP (Waguri et al., 2003). The anti-GFP is taken up in association with GFP-MPR and undergoes retrograde transport from the plasma membrane to the TGN.

Fig. 3.

Analysis of endocytosis and TGN/Golgi-to-ER transport in Syn5 RNAi cells. (A) Glycosylation analysis. Iodinated STxB-Glyc-KDEL was incubated with mock-transfected or RNAi-transfected HeLa cells for 4 hours. The percentage of glycosylated STxB-Glyc-KDEL was determined from gels, as described (Johannes et al., 1997; Mallard and Johannes, 2003). Glycosylation of STxB-Glyc-KDEL in mock-transfected cells was taken as the maximal possible (100%) value. Mean ± s.e.m. of two to three experiments. (B,C) The endocytosis of (B) STxB and (C) Tf was determined on the same cells. Data represent the percentage of cell-surface inaccessible biotin-tagged STxB or Tf at each time point. Mean ± s.e.m. of four experiments. (D,E) Quantitative analysis of TGN/Golgi-to-ER transport. (D) STxB-Sulf-Glyc-KDEL was internalized into mock-transfected (± tunicamycin) or siRNA-transfected HeLa cells for 2 hours in the presence of radioactive sulfate and then chased for 4 hours at 37°C. Cells were lysed, STxB-Sulf-Glyc-KDEL immunoprecipitated and analyzed by SDS-PAGE. The uppermost band (1) corresponds to the glycosylation product which disappears upon tunicamycin treatment. See text for details. (E) Quantitative analysis by Phosphoimager of the mean of two to three experiments ± s.e.m., as shown in D. Data express the percentages of sulfated STxB-Sulf-Glyc-KDEL that also become glycosylated in each experimental condition.

Mass spectroscopy analysis permitted estimation of the CTxB modification to approximately two sulfation peptides per CTxB pentamer (not shown). Because of its size, this analysis was not performed on anti-GFP antibody. Sulfation analysis revealed that CTxB and MPR constructs were indeed sulfated in HeLa cells (Fig. 4B). Due to the reduced labeling efficiency of CTxB-Sulf2 and the sulfation-site-peptide-modified anti-GFP-MPR antibody, retrograde transport was sampled for 40 minutes, and not for 20 minutes, as above. This sulfation was inhibited by brefeldin A (BFA) (Fig. 4B), confirming that it depended on retrograde transport (Mallard et al., 1998). These experiments, like those reported below, were performed on a HeLa-cell clone in which the STxB receptor Gb3 is uniformly expressed throughout the cell population and which has high levels of the CTxB receptor GM1.

In experiments in which the different markers were tested in a pair-wise manner on the same cells, it was found that retrograde transport to the TGN of CTxB and MPR was inhibited to a similar extent to that of STxB in Syn16 (Fig. 4C) or Syn5 (Fig. 4D) RNAi cells. These data reveal that these different exogenous and endogenous cargo proteins share a Syn5- and Syn16-based machinery for efficient retrograde transport.

Immunofluorescence analysis showed that in Syn16 (Fig. 5A) or Syn5 (Fig. 5B) RNAi cells, STxB (red) and CTxB (green) were both blocked in perfect overlap in peripheral endosomes. These observations further support the contention that STxB and CTxB use the same route to traffic between endosomes and the TGN. Their binding to cells appears to be independent, though, because it could be shown that CTxB does not compete with radiolabeled STxB for binding to cells (Fig. 5C). As a control, the efficient competition of unlabeled STxB was demonstrated. Furthermore, the quantification of STxB- and CTxB-positive cells in our HeLa-cell culture system revealed that Gb3 and GM1 expression appear to be largely independent (Fig. 5D).

Fig. 4.

Retrograde transport of different cargo proteins in Syn5 RNAi and Syn16 RNAi cells. (A) Constructs used for sulfation analysis. A genetic fusion of STxB with tandem sulfation sites was made as described (Mallard et al., 1998). For CTxB, a tandem-sulfation-site peptide was chemically coupled to primary amines. In the case of MPR, the tandem-sulfation-site peptide was chemically coupled to an anti-GFP antibody recognizing MPR-GFP protein in stably transfected HeLa cells (Waguri et al., 2003). (B) Sulfation analysis of sulfation-site -peptide-coupled CTxB and MPR. HeLa cells were incubated for 40 minutes with the indicated proteins in the presence of radioactive sulfate with or without BFA, followed by immunoprecipitation and autoradiography. For CTxB, the arrow indicates sulfated toxin-B subunit, whereas the upper bands, visible under conditions with or without BFA, originate from contaminating endogenous sulfoproteins at the level of the load. (C,D) STxB-Sulf2, CTxB-Sulf2 and sulfation-site-coupled anti-GFP-MPR antibody were incubated for 40 minutes in the presence of radioactive sulfate with HeLa cells that had been transfected with (C) Syn16 siRNA number 3 or (D) Syn5 siRNA number 1. Sulfated proteins were immunoprecipitated and analyzed by SDS-PAGE and autoradiography. Sulfation signals are expressed as normalized percentages of sulfation observed in mock-transfected control cells.

Intoxication analysis under Syn5 and Syn16 RNAi conditions

In the next experimental series, we analyzed how intoxication of cells with STx, CTx and ricin was affected by the presence of reduced levels of Syn5 or Syn16. Under conditions of Syn16 down-modulation, HeLa cells were partly protected against intoxication by Shiga toxin (STx) (Fig. 6A). In these experiments, the effect on protein synthesis of adding increasing concentrations of STx to cells was measured. It was observed that in Syn16 RNAi cells, higher doses of STx were needed to obtain the same level of protein synthesis inhibition as in mock-transfected control cells. Indeed, the IC50 was shifted from 0.12 ng/ml in mock-transfected cells to 0.37 ng/ml in Syn16 RNAi cells (3.1-fold protection). These data clearly indicate that efficient retrograde transport is required for efficient toxin arrival in the cytosol. The specificity of the effect was documented by the finding that diphtheria toxin, which translocated across the membrane of early endosomes (Lemichez et al., 1997) and does not depend on the retrograde pathway to intoxicate cells (Yoshida et al., 1991), could inhibit protein biosynthesis efficiently under Syn16 RNAi conditions (not shown).

Unexpectedly, we observed that Syn5 RNAi protected cells more against STx than Syn16 RNAi (Fig. 6A), shifting the IC50 to 37.6 ng/ml for Syn5 RNAi cells (313-fold protection). This effect was specific for Syn5, because reducing the levels of GS15 resulted in an IC50 of 0.53 ng/ml (Fig. 6B; 4.4-fold protection), analogous to the outcome of lowering endogenous Syn16. When used in combination, the effect of Syn5-Syn16 RNAi (IC50 of 38.4 ng/ml, 320-fold protection; Fig. 6B) was no different to that of Syn5 RNAi alone. These observations showed that, despite their similar effects on retrograde transport to TGN/Golgi membranes – as measured by the analysis of sulfation (Fig. 2B) and glycosylation (Fig. 3A), reduced levels of Syn5 and Syn16 had very different effects on cell intoxication by STx.

To further characterize the effect of Syn5 and Syn16 RNAi on the action of toxins routed via the TGN/Golgi and ER, we tested both CTx and ricin. The A1 subunit of CTx acts as an ADP-ribosyltransferase and catalyzes the transfer of an ADP-ribose to the α-chain of GS heterodimeric G-proteins (De Haan and Hirst, 2004). This stabilizes the GTP bound form of Gαs, lowering its GTPase activity and thereby creating a constitutive signal for the activation of adenylyl cyclase, leading to an elevation of cellular cAMP levels. We found here that the capacity of CTx to increase cellular cAMP was reduced under Syn5 and Syn16 RNAi conditions (Fig. 6C), consistent with the need for a step, mediated by these syntaxins, to gain cytosolic entry. The combined use of Syn5-Syn16 RNAi had only a slight additive effect.

Fig. 5.

Co-distribution analysis of STxB and CTxB. (A,B) Immunofluorescence analysis of STxB (red) and CTxB (green) distribution in (A) Syn16 RNAi or (B) Syn5 RNAi cells after internalization for 45 minutes at 37°C. (C) Competition analysis. Iodinated STxB was incubated with HeLa cells in the presence of increasing concentrations of non-labeled CTxB or STxB. The amount of cell-associated radioactivity under each condition was determined. Note that CTxB did not displace the iodinated STxB from its receptor. (D) Binding analysis. HeLa cells were incubated on ice with 1 μM Alexa Fluor-488-labeled CTxB and 1 μM Cy3-labeled STxB. The cells were washed and fixed, and numbers of cells positive for one or the other marker were counted. Double-positive cells are roughly present at numbers as expected if GM1 and Gb3 expressions are independent events.

Ricin is another toxin known to follow the retrograde route to ER (Sandvig and van Deurs, 1999). Like STx, ricin is a ribosome-inactivating protein catalyzing the same depurination of 28S rRNA (Endo et al., 1987; Endo et al., 1988). The IC50 was shifted from 0.2 ng/ml in control cells to 1.5 ng/ml in Syn16 RNAi cells (Fig. 6D), resulting in a 7.5-fold protection against the toxin. The consequence of Syn5 and GS15 knockdowns were very similar and close to that observed with Syn16. Indeed, the protection against this toxin was 4.5-fold and threefold with Syn5 and GS15 RNAi, respectively (Fig. 7D). We therefore conclude that Syn5 and Syn16 RNAi inhibited the action of all three toxins by interfering with their productive trafficking to the ER. Surprisingly, the protective effect was particularly striking in the combination of Syn5 RNAi and STx.

One possible explanation for this difference is the displacement under Syn5 RNAi conditions of a factor specifically required for the processing of the A-subunit of STx to A1 and A2 fragments, thus explaining the selective effect on only this toxin. To test this hypothesis, inhibition of protein biosynthesis in mock-transfected and Syn5-RNAi-treated cells was compared for untreated STx and a pre-nicked version thereof (Fig. 6E). However, because no difference between the toxin preparations was detected, we exclude this possibility.


The list of proteins and lipids that escape the endocytic pathway for targeting to TGN/Golgi membranes is increasing, but it is currently unclear how many pathways exist to link the endocytic and the biosynthetic/secretory routes, and whether different cargo proteins all use the same molecular machinery for trafficking across the endosomes-TGN/Golgi interface. In this study, we have adopted the sulfation test methodology (Johannes et al., 1997; Mallard and Johannes, 2003) to study retrograde transport of several exogenous and endogenous proteins. We observed that down-modulating the expression of Syn16 and Syn5 inhibited retrograde transport and the productive intoxication by three protein toxins, STx, CTx and ricin, and the retrograde transport of MPR. The protective effect against STx action was much stronger with Syn5 RNAi than with RNAi targeting Syn16 or the Syn5 SNARE complex partner GS15, and the Syn5 RNAi effect was more pronounced against STx than on cells challenged with CTx or ricin. This points to an as-yet-unidentified STx-specific function of this SNARE in steps downstream of initial delivery to the ER lumen.

Fig. 6.

Syn5 and Syn16 RNAi effects on cell intoxication by STx, CTx and ricin. (A) Mock-transfected control cells or HeLa cells transfected with the indicated siRNAs were treated for 1 hour at 37°C with the indicated doses of STx. Protein biosynthesis was then determined by measuring the incorporation of radiolabeled methionine into acid-precipitable material. Data are presented as percentage of protein biosynthesis under the indicated conditions when compared with non-toxin-treated cells. (B) Cells were treated for 1 hour with the indicated doses of STx and analyzed as described in A. (C) Mock-transfected or RNAi-transfetced cells were treated with increasing doses of CTx, and cAMP production was measured to detect CTx arrival in the cytosol. (D) Mock-transfected or RNAi-transfetced cells were treated for 1 hour with the indicated doses of ricin, and analyzed as described in A. (E) Intoxication of HeLa cells by un-nicked (STx) or pre-nicked STx (Nicked) in mock-transfected control cells or Syn5 RNAi cells (siSyn5). Pre-nicking did not alter the Syn5-RNAi-mediated protection of cells against the toxin. (A-E) Means of two to four experiments.

Cargo proteins in the retrograde route

Based on the experiments described in this study, we conclude that several exogenous and endogenous cargo proteins share with STxB the elements of retrograde transport machinery for their efficient trafficking between endosomes and the TGN/Golgi. Until now, very few studies have been designed to address this question directly. To a large extent, this was due to the fact that molecular inhibitors of the retrograde route and quantitative tools for its analysis have only become available relatively recently. The first quantitative tools to assess membrane traffic between endosomes and TGN/Golgi membranes were based on the endogenous protein MPR (Goda and Pfeffer, 1988), and the exogenous STxB and ricin (Johannes et al., 1997; Rapak et al., 1997). It is therefore not surprising that most of the available comparative data were obtained with these proteins.

MPR trafficking studies allowed identification of Rab9 (Lombardi et al., 1993) and TIP47 (Diaz and Pfeffer, 1998) as molecular players at the interface between late endosomes and the TGN. More recently, it has been found that MPR can also use the EE/RE-to-TGN pathway regulated by Syn16/Rab6a (Saint-Pol et al., 2004). Other studies showed that the capacity of the ER-routed Pseudomonas exotoxin A to intoxicate cells was sensitive to Rab9 RNAi (Smith et al., 2006b), whereas Rab9 did not appear to function in the cell entry of ricin (Iversen et al., 2001; Simpson et al., 1995). The exact interplay between the pathways of Syn16-Rab6a and TIP47-Rab9 still remains to be established.

A comparison of ricin and STxB reveals both differences and similarities in their trafficking between endosomes and TGN/Golgi membranes. The most notable difference was the observation that clathrin is required for retrograde transport of STxB (Lauvrak et al., 2004; Saint-Pol et al., 2004) but not for that of ricin (Iversen et al., 2001). Similarly, changes in calcium homeostasis affected ricin but not STx (Lauvrak et al., 2002). However, for both toxins, interfering with the integrity of membrane domains of the raft type prevented retrograde transport (Falguières et al., 2001; Grimmer et al., 2000). It was also found that for both ricin and STx, overexpression of wild-type Rab11 or expression of a dominant-negative Rab11 mutant moderately inhibited retrograde transport (Iversen et al., 2001; Wilcke et al., 2000). Taken together with our results, which show partial protection of cells against ricin and STx intoxication under conditions of Syn5 and Syn16 knockdown, we suggest that both toxins share a common mechanism for targeting TGN/Golgi membranes. However, clathrin-dependent or not, they may rely on different retrograde sorting machinery on EE/RE.

For CTxB, quantitative biochemical tools to study retrograde transport have only recently become available (Fujinaga et al., 2003) (this study). Before this, it had been noticed that CTxB and STxB have very similar structures but that their binding to their glycosphingolipid receptors – GM1 for CTxB and Gb3 for STxB – appears to follow different rules. Indeed, whereas for STxB, the affinity for one globotriose carbohydrate molecule is extremely weak (Kd values in the mM range), CTxB has μM affinity for its carbohydrate receptor in solution (for a review see Pina and Johannes, 2005). Cell-surface-binding studies have shown that stimulating the uptake of one toxin receptor, i.e. GM1 or Gb3, does not affect the presence at the cell surface of the reciprocal receptor (Schapiro et al., 1998). Despite this, both toxins share the characteristic of interacting with membrane microdomains of the raft type (Falguières et al., 2001; Katagiri et al., 1999; Kovbasnjuk et al., 2001), and fluorescence resonance energy transfer studies have indicated that both toxins can be very close together after binding to the plasma membrane (Kovbasnjuk et al., 2001). Once inside the cell, whether by clathrin-dependent or -independent endocytosis (Kirkham et al., 2005; Lauvrak et al., 2004; Saint-Pol et al., 2004; Sandvig et al., 1989), CTxB and STxB both depend on golgin-97 (Lu et al., 2004), and Syn5 and/or Syn16 (this study) functions to reach TGN/Golgi membranes.

Later steps of retrograde transport

Considering the established involvement of the Syn5 SNARE in membrane exchange between the ER and Golgi complex (Dascher et al., 1994; Hay et al., 1997), the description of Syn5 function at the EE/RE-TGN interface (Tai et al., 2004) came as a surprise. One possibility was that Syn5 may function in retrograde transport at several levels of the retrograde route, e.g. at the EE/RE-TGN interface and at the Golgi-ER interface. However, the observations reported in our current study clearly demonstrate that once STxB has reached TGN/Golgi membranes, Syn5 RNAi does not have an effect on further retrograde transport to the ER. This suggests that, within the retrograde pathway, Syn5 function is restricted to the EE/RE-TGN interface.

Surprisingly, however, although Syn5 RNAi had no effect on toxin trafficking beyond the EE/RE-to-TGN step, it significantly protected cells against STx action, considerably more (∼100-fold) than against ricin or CTx. STx and ricin have the same catalytic mechanism (Endo et al., 1987; Endo et al., 1988), and our studies show that STxB transport to the ER is not inhibited more in Syn5 RNAi cells than in Syn16-RNAi- or GS15-RNAi-transfected cells. Therefore, the STx-specific effect of Syn5 RNAi most likely resides at the level of the ER. Whether this effect is direct, such as a role of Syn5 in retro-translocation or in the distribution of Shiga toxin receptors within ER microdomains (Smith et al., 2006a), or indirect, such as a requirement for ER-Golgi cycling prior to retrotranslocation, remains to be determined in later studies. In conclusion, we have shown that several exogenous and endogenous cargo proteins share the same protein machinery for efficient retrograde transport at the EE/RE-TGN interface, which suggests the existence of limited molecular redundancy for targeting the TGN/Golgi from endosomes.

Materials and Methods

Materials, recombinant proteins and antibodies

Monoclonal antibody anti-CTR433 was from M. Bornens (Institut Curie, Paris, France), and polyclonal antibodies against Syn16 and Syn5 were from W. Hong (IMCB, Singapore). Monoclonal antibodies against TfR (Sigma), GFP (Roche), clathrin heavy chain, γ-adaptin, GS15 (all BD Biosciences), polyclonal antibodies against Syn7 (Synaptic Systems), and FITC-, Cy3- and Cy5-coupled secondary antibodies (Jackson Immuno-research) were purchased from the indicated suppliers. STxB-FITC, CTxB-Cy3, STxB-Sulf2 and monoclonal anti-STxB antibody 13C4 were prepared as previously described (Johannes et al., 1997; Mallard et al., 1998).


HeLa cells were cultured as described (Johannes et al., 1997). HeLa cells stably transfected with GFP-MPR300 were from B. Hoflack (Universität Dresden, Germany) and were grown in the presence of 0.5 mg/ml of Geneticin (G418).

RNA interference

Three synthetic siRNA duplex oligomers (21-mers) targeting human syntaxin 16 (first: ACAGCUUCACAAGGCAGAA; second: GGACCUUUGAUACUGCUGC; third: GCAGCGAUUGGUGUGACAA), two 21-mers targeting human syntaxin 5 (first: AAGTGAGGACAGAGAACCTGA; second: AAAGGAAGCGTTGGCAGCAAA), two siRNA targeting syntaxin 7 (first: ACTTCCAGAAGGTCCAGAGTT; second: GTTTTGGGCCACATTGCATT), and one scrambled siRNA (GACAAGAACCAGAACGCCATT) were designed and then ordered from a commercial supplier (MWG-Biotech, Germany). Cells were transfected using oligofectAMINE (Invitrogen) according to the manufacturer's instructions. Experiments were carried out 3 days after transfection. Except for experiments described in Fig. 1, concentrations of 200 nM of siRNA were used for transfection.

Imunofluorescence analysis

Immunofluorescence analysis was performed as previously described (Mallard et al., 1998). Briefly, cells were incubated with 1 μM STxB-FITC, STxB-Cy3 or CTxB-Cy3 for 30 minutes at 4°C, shifted to 37°C for 45 minutes, fixed in 4% paraformaldehyde and permeabilized with saponin. After labeling with the indicated antibodies, coverslips were mounted and analyzed by confocal microscopy (Leica Microsystems, Mannheim, Germany).

Chemical coupling

For the coupling of sulfation-site peptide to CTxB or anti-GFP antibody, the following procedure was performed as described (Amessou et al., 2006). Briefly, CTxB or anti-GFP antibody (50 to 100 μM in 50 mM sodium phosphate buffer, 1 mM EDTA, pH 7.5) were incubated at room temperature for 30 minutes with 0.8-1.5 mM SATA reagent (N-Succinimidyl-S-acetylthioacetate; Pierce). Activated molecules were then incubated for 2 hours at room temperature with bromo-acetylated sulfation-site peptide (Neosystem, Strasbourg, France) in the presence of 500 mM hydroxylamine. The coupling reaction was then stopped by dialysis against PBS buffer.

Sulfation analysis

Sulfation analysis was performed as described before (Mallard et al., 1998). When two cargo proteins were analyzed, the following modifications were used. 1 μM of STxB-Sulf2 were simultaneously incubated with HeLa cells in the presence of 1 μM of CTxB-Sulf2 or 15 μg/ml of anti-GFP-Sulf2 antibody. After uptake in the presence of 0.4 mCi/ml radioactive sulfate (Amersham), cells were lysed in PBS, 1% Triton X-100 and protease-inhibitor cocktail, and centrifuged for 10 minutes at 3000 g to remove the nuclei. 10% of the supernatant was immunprecipitated with monoclonal anti-STxB antibody (13C4), whereas 90% of the supernatant were precipitated with either streptavidine-agarose (CTxB-Sulf2) or with protein G-Sepharose (anti-GFP-Sulf2 antibody). Sulfated cargos were analyzed by SDS-PAGE autoradiography. In parallel, the sulfation of endogenous proteins and proteoglycans was determined by TCA-precipitation from immunopreciptation supernatants and used to normalize data obtained when studying toxin sulfation in various conditions. Total sulfation counts are usually similar in all conditions, except for Syn5 RNAi (see Fig. 2C).

Glycosylation analysis

Glycosylation analysis and tunicamycin treatment were performed as previously described (Johannes et al., 1997; Mallard et al., 1998).

Cytotoxicity assays

STx, DTx and ricin cytotoxicities were measured by the ability of cells to incorporate [35S]-methionine into acid-precipitable material following toxin treatment. HeLa cells were seeded at 1.5×104 cells per well into flat-bottomed 96-well plates and grown overnight. Cells were then overlaid with medium containing appropriate concentrations of toxin for 60 minutes. Remaining cellular protein synthesis following toxin treatment was determined from the incorporation of a 60-minute pulse of 1 μCi [35S]-methionine per well into total protein. Plates were then washed three times with ice-cold 5% TCA to precipitate proteins. After two more washes in PBS, radioactivity was counted in Wallac Optiphase Supermix. For measuring CTx-induced cAMP production, cells were detached with 2 mM EDTA in PBS and incubated with indicated concentrations of CTx for 2 hours at 37°C. After lysis in 0.1 M HCl, intracellular cAMP levels were assayed using the Direct cAMP Enzyme Immunoassay kit (Sigma).

STxB- and Tf-internalization assays

STxB-K3 (STxB variant with three C-terminal lysines) and human diferric transferrin were biotinylated using NHS-SS-biotin following manufacturer's instructions (Pierce). Endocytosis was measured as described recently (Amessou et al., 2006). Briefly, serum-starved cells were detached from plates with 2 mM EDTA in PBS and incubated in the presence of 1 μM biotin-STxB and 200 nM biotin-Tf for 30 minutes on ice. After washing, cells were incubated at 37°C for the indicated times (1.5×105 cells per data point). The remaining biotin on cell-surface-exposed STxB or transferrin was cleaved by subsequent treatment with 100 mM of the non-membrane permeable reducing agent sodium 2-mercaptoethanesulfonic acid (MESNA) on ice for 20 minutes. After washing, excess MESNA was quenched with 100 mM iodoacetamide for 20 minutes. Cells were lysed in blocking buffer (10 mM Tris [pH 7.4], 1 mM EDTA, 50 mM NaCl, 0.2% BSA, 0.1% SDS, and 1% Triton X-100) before loading on ELISA plates coated either with anti-Tf or anti-STxB antibody (13C4). Biotinylated STxB or transferrin was detected using streptavidin-HRP (Roche). The reaction was stopped with 3 M sulphuric acid and the plate was read at 490 nm. The percentage of internal STxB (or Tf) was determined as the ratio of signal after MESNA reduction (internal ligand) to signal without reduction (total ligand).

EGF-degradation and Tf-recycling assays

The assays were performed as described previously (Mallard et al., 1998; Saint-Pol et al., 2004). Briefly, HeLa cells were serum-starved and incubated for 30 minutes on ice with iodinated EGF (750 Ci/mmol; Amersham Life Sciences). Cells were washed, shifted to 37°C for the indicated times, and put back on ice. TCA-soluble counts from cells and culture medium were expressed as percentage of total cell-associated radioactivity.

VSVG-GFP anterograde transport assay

Cells were transfected with ts045-VSVG-GFPct plasmid DNA (Scales et al., 1997). Transfection was carried out with Calcium Phosphate Transfection Kit (Invitrogen) using 5 μg of plasmid per transfection. After transfection, cells were incubated at 40°C for 20 hours. The cells were then detached from plates with 20 mM EDTA in PBS, washed in PBS++ (PBS containing 0.1 mM CaCl2 and 0.1 mM MgCl2, pH 7.4) and pre-incubated or not with 5 μg/ml BFA at 40°C. Cells were then incubated for 2 hours at 32°C or put on ice. Surface proteins were biotinylated with 2.5 mg/ml NHS-SS-biotin in PBS containing Ca2+ and Mg2+ for 10 minutes on ice. The reaction was quenched with 50 mM NH4Cl for 10 minutes on ice, the cells were lysed in buffer containing 1% Triton X-100, 0.1% SDS, 0.2% BSA, 50 mM NaCl, 1 mM EDTA, 10 mM Tris pH 7.4. Cell lysates were divided in two, transferred to 96-well ELISA plates coated with anti-VSVG antibody, and revealed by ELISA for anti-HRP-streptavidin antibody (cell surface VSVG) or anti-GFP antibody (total VSVG protein). The latter was used for normalization.


We thank Wanjin Hong, Michel Bornens, Bernard Hoflack, and Philippe Benaroch for reagents, Wolfgang Faigle and Lucien Cabanié for technical help, and Robert Spooner and Katherine Moore for nicked and wild-type Shiga toxin. This work was supported by grants from the Ligue Nationale contre le Cancer, Association de Recherche contre le Cancer (no. 5177, 3105 and 3143), Fondation de France, and Action Concertée Incitative – Jeunes chercheurs (no. 5233) to C.L. and L.J., by a Wellcome Trust programme grant (080566/Z/06/Z) to L.M.R. and J.M.L., and by fellowships from Ligue Nationale contre le Cancer and Fondation pour la Recherche Médicale to T.F. and Fondation de France for M.A.


  • * These authors contributed equally to this work

  • Accepted February 15, 2007.


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