ABBA regulates plasma-membrane and actin dynamics to promote radial glia extension.

Radial glia play key roles in neuronal migration, axon guidance, and neurogenesis during development of the central nervous system. However, the molecular mechanisms regulating growth and morphology of these extended cells are unknown. We show that ABBA, a novel member of the IRSp53-MIM protein family, is enriched in different types of radial glia. ABBA binds ATP-actin monomers with high affinity and deforms PtdIns(4,5)P(2)-rich membranes in vitro through its WH2 and IM domains, respectively. In radial-glia-like C6-R cells, ABBA localises to the interface between the actin cytoskeleton and plasma membrane, and its depletion by RNAi led to defects in lamellipodial dynamics and process extension. Together, this study identifies ABBA as a novel regulator of actin and plasma membrane dynamics in radial glial cells, and provides evidence that membrane binding and deformation activity is critical for the cellular functions of IRSp53-MIM-ABBA family proteins.


Introduction
Development of the central nervous system (CNS) depends on precisely regulated migration of precursor cells into their final locations, where they mature, form appropriate tissue architecture, and send axons to target areas. Different populations of glia are critical for the formation of the CNS. Radial glial cells are derived from the neuroepithelial cells shortly after the onset of neurogenesis and are characterised by a highly polarised morphology. Their somata reside in the ventricular zone whereas the radial processes span the entire thickness of the developing neural tube. Specialised midline radial glia participate in axon guidance and neural tube patterning whereas the processes of more widely distributed radial glia guide newborn neurons towards their final positions. In addition, radial glial cells may act as neuronal progenitors giving rise to most neurons in the cortex as well as in other brain areas (Lemke, 2001;Anthony et al., 2004;Götz and Huttner, 2005). Most radial processes retract later in development, and the cells are transformed into astrocytic glia, which may contribute to the neural stem cell or progenitor population residing in the neurogenic regions of the adult CNS (Doetsch, 2003). However, specific radial glia populations remain in certain parts of the adult the CNS, such as the Bergmann cells in the cerebellum and Müller cells in the retina (Morest and Silver, 2003).
The actin cytoskeleton is a dynamic structure that has a central role in a number of cellular processes involving membrane dynamics and motility. The architecture and dynamics of the actin cytoskeleton are regulated by a plethora of actin-binding proteins, which are controlled by various signalling molecules, including the small GTPases and phosphoinositides (Dent and Gertler, 2003;Di Paolo and De Camilli, 2006;Pollard and Borisy, 2003). The actin cytoskeleton has an essential role in many developmental processes, including the formation of CNS. A number of regulators of actin dynamics have been linked to CNS morphogenesis, axon and dendritic guidance, as well as formation and dynamics of dendritic spines (Lanier et al., 1999;Rakic and Caviness, Jr, 1995;Boquet et al., 2000;Strasser et al., 2004;Tada and Sheng, 2006). In contrast to the rather well-established roles in neurons, regulation of the actin cytoskeleton in glial cells has remained poorly understood, and no glia-specific regulators of the actin cytoskeleton have been reported so far.
A key protein regulating the morphology and density of dentritic spines is the insulin receptor tyrosine kinase substrate p53 (IRSp53) (Choi et al., 2005). IRSp53 is a member of a protein family consisting of five relatively large proteins that share an N-terminal IRSp53 and MIM (missing in metastasis) (IM) domain (Yamagishi et al., 2004). In most cases, these proteins also contain a C-terminal WASP-homology 2 (WH2) domain, a known actin-monomerbinding motif (Lee et al., 2007;Millard et al., 2007). Members of the IM domain protein family appear to be involved in the formation of membrane protrusions, such as filopodia, lamellipodia and plasma membrane ruffles, where they may function downstream of the Rho family of GTPases Mattila et al., 2003;Miki et al., 2000;Millard et al., 2007;Suetsugu et al., 2006b;Disanza et al., 2006). IM domains display remote structural homology to the membrane-deforming Bin-amphiphysin-Rvs (BAR) domains (Itoh et al., 2005;Lee et al., 2007;Millard et al., 2005). However, IM domains were reported to display both actinfilament-bundling (Millard et al., 2005;Yamagishi et al., 2004) and membrane-deforming activities Suetsugu et al., 2006b) and the biological significance(s) of these activities has remained controversial. Furthermore, the exact mechanism by which these proteins promote the formation of plasma membrane protrusions remains to be elucidated.
Here we show that a previously uncharacterised member of the IM-domain protein family, ABBA, is specifically expressed in radial glia during CNS development. Biochemical analysis revealed that ABBA induces membrane curvature through its IM domain and interacts with the actin cytoskeleton through its WH2 domain. Interestingly, ABBA localises to the interface between the plasma membrane and the actin cytoskeleton in radial-glia-like C6-R cells, and its depletion results in defects in plasma membrane dynamics and process extension. Together, these studies identify ABBA as the first regulator of cytoskeletal dynamics and cellular morphogenesis in radial glial cells.

Results
ABBA, a novel member of the IM-domain protein family, is specifically expressed in radial glial cells during mouse development In search of homologues to the IM-domain family proteins MIM and IRSp53 (also known as BAIAP2), we identified a mouse cDNA (BC060632) that translates into a 715-residue protein containing a putative N-terminal IM domain (supplementary material Fig. S1A) and a C-terminal WH2 domain. The human homologue of this protein was named ABBA (actin-bundling protein with BAIAP2 homology) (Yamagishi et al., 2004). However, the biochemical and cell biological properties of ABBA have not been characterised. Our database searches revealed that ABBA is highly conserved among vertebrate species ranging from fish to human (supplementary material Fig. S1B). In addition to the IM and WH2 domains, ABBA contains a serine-rich stretch, three proline-rich stretches, and a leucine-zipper motif ( Fig. 1A and supplementary material Fig. S1B).
Northern blot analysis revealed that in adult tissues ABBA was predominantly expressed in the brain and moderately in the testis, skeletal muscle and lung (Fig. 1B). Low expression levels were also detected in the kidney, liver and heart. These results were confirmed by RNA in situ hybridisation assays performed on tissue sections (data not shown). shows a single band that was predominant in brain. Each lane contains 2 μg total RNA. RNA in situ hybridisation analysis on sections from mouse embryos at E12.5 (C-F), E14.5 (G-I) and E18.5 (J) and adult cerebellum (K). Probes are indicated in the images. At E12.5 ABBA is strongly expressed in the floorplate of the spinal cord (C) and hindbrain (F), whereas weaker expression is detected in parenchyma and in the outer border of the marginal zone (arrowheads) where radial glia endplates locate. (D) MIM is expressed in spinal cord neurons and its expression is distinct from that of ABBA. (E) No specific signal was obtained with the ABBA sense probe. (G) Sagittal section from E14.5 mouse head where ABBA mRNA was detected in the pial surface surrounding the brain and in the midline glial raphe. (H) ABBA mRNA was detected in the developing cortex at E14.5 and especially in the outer border of the marginal zone (arrowhead). Cross section at E14.5 (I) and sagittal section at E18.5 (J) show ABBA expression in the brainstem raphe. (K) In the adult brain, the strongest ABBA expression is confined to the molecular layer of the cerebellum. cp, cortical plate; fp, floorplate; hb, hindbrain; mz, marginal zone; ra, glial raphe; spc, spinal cord; vz, ventricular zone. Scale bars: 0.1 mm in C-F, H-K and 0.2 mm in G.
To reveal the developmental distribution of ABBA mRNA, we performed RNA in situ hybridisation analyses covering mouse developmental stages E9.5-E18.5. At E9.5-E10.5, ABBA mRNA was detected only in the floorplate at the ventral midline of the neural tube from the midbrain until the end of spinal cord (data not shown). The floorplate is a transient structure formed by radially oriented glial cells. At E12.5, the strongest expression was detected in the floorplate area, where ABBA mRNA was present especially in the marginal zone containing cellular extensions and only few cell bodies (Fig. 1C). At E12.5, expression became also evident in the outer edge of the marginal zone close to the pial surface, where the radial glial end-feet attach (arrowheads in Fig. 1C,F). Weaker expression was also detected in brain and spinal cord parenchyma Journal of Cell Science 121 (9) (Fig. 1C,F) and in the developing bone and skeletal muscle (data not shown). No signal was detected at any stage with the ABBA sense probe ( Fig. 1E and data not shown). The expression of the close homologue MIM was detected in developing neurons and heart ( Fig. 1D) (Mattila et al., 2003).
At E14.5, strong expression of ABBA was detected in a specific midline glial raphe structure (Fig. 1G,I), as well as in the pial surface surrounding the brain tissue ( Fig. 1G), including the cortex (arrowhead in Fig. 1H). Presence of ABBA mRNA in the pial surface and in the glial raphe was detected also at E18.5 (Fig. 1J). In the adult brain, the strongest expression of ABBA was detected in the molecular layer of the cerebellum whereas moderate expression was present throughout the brain ( Fig. 1K and data not shown). Together, (A) Anti-ABBA antibody recognises a single band from NIH3T3 cell lysate corresponding to the GFP-tagged ABBA, and a lower molecular weight protein from mouse whole brain lysate corresponding to endogenous ABBA. Immunohistochemical detection of ABBA protein (red) on sections from E12.5 (B,E) and E14.5 (I,M,Q) mouse embryonic tissue. Double labelling was performed either with RC2 (C,J,R) or Tuj1 (F,N) (green) and colocalisation with ABBA appears yellow in merged images (D,G,K,O,S) and in corresponding higher magnifications (H,L,P,T). At E12.5, the strongest ABBA expression was detected in the hindbrain floorplate where it colocalised with RC2. ABBA was detected in the radial glia fibers throughout the hindbrain region (arrowhead) and was enriched in the marginal zone where the radial glia end feet are located (arrow) (B-D). No colocalisation was observed with Tuj1, which labelled interneuron axons crossing the ABBApositive spinal cord floorplate (E-H). At E14.5, ABBA colocalises in glial raphe (arrow) with RC2 (I-L) but not with Tuj1 (M-P). ABBA was detected throughout the developing cortex, where it colocalises in radial glia with RC2 (Q-T). cp, cortical plate; fp, floorplate; hb, hindbrain; mz, marginal zone; ra, glial raphe; gf, glial fiber; vz, ventricular zone. Scale bars: 20 μm in B-G, I-K, M-O, Q-S and 10 μm in H,L,P,T. these analyses suggest that in the developing CNS, ABBA is strongly expressed in different populations of midline radial glial cells and that high levels of ABBA mRNA are also present in the pial end-feet of other radial glia.
To confirm that ABBA was indeed expressed in radial glia, we generated a polyclonal antibody against the central region of mouse ABBA protein that is not conserved in other IM-domain proteins. Western blot analysis demonstrated that the antibody detected only a single band of expected mobility from brain lysates and in NIH3T3 cells expressing a GFP-fusion protein of ABBA ( Fig. 2A). Furthermore, the antibody did not recognise other IM-domain proteins, IRSp53 and MIM, on a western blot, suggesting that the antibody is specific to ABBA (supplementary material Fig. S2). Immunohistochemical analysis on mouse embryonic tissues at E12.5 revealed that, as with ABBA mRNA, the highest level of ABBA protein was present in the floorplate (Fig. 2B). Double labelling with the radial glial marker anti-RC2 showed co-labelling in the floorplate, especially in the cellbody-free zone (Fig. 2D), suggesting that the two proteins colocalised in radial glial cell extensions. Low levels of ABBA protein were detected in the thin radial glial extensions across the hindbrain, together with RC2 (arrowheads in Fig. 2B,C), whereas higher levels were detected in the end-feet areas (arrows in Fig.  2B,D). In the spinal cord, ABBA was detected in floorplate glia that formed intimate contacts with Tuj1labelled interneuron axons crossing the midline at the cell-body-free zone of the floorplate ( Fig. 2E-H). At E14.5, ABBA, together with RC2, was detected in a massive radial glial structure distributed in the midline raphe of the brainstem ( Fig. 2I-L). The glial raphe forms a continuous wall-like structure separating the left and right brainstem, and possibly inhibiting growing axons from aberrantly crossing the midline (Mori et al., 1990). Tuj1 labelled adjacent neuronal tissue in the brainstem and no co-labelling with ABBA was detected ( Fig. 2M-P), suggesting that ABBA was specifically confined to the radial glia. In the developing cortex, ABBA was detected throughout the tissue colocalising with RC2 in radial glia ( Fig. 2Q-T). Similarly to ABBA mRNA, ABBA protein staining was strong in the radial glial end-feet area, next to the pial surface. In the adult brain, the highest levels of ABBA were detected in the molecular layer of the cerebellum, both in the Bergmann glia, as well as in the tightly associated Purkinje cell extensions (data not shown). (I-K) Three-dimensional confocal microscopy analysis from C6-R cells confirmed the localisation of ABBA to the interface between plasma membrane and the actin cytoskeleton (white arrowheads). ABBA is in green whereas Factin (panels D,E,I,J,K) and plasma membrane (panels G,H) are in red. Scale bars: 20 μm in C-H; 5 μm in I; 2 μm in J,K.
Western blot analysis using primary glial and neuronal cell extracts derived from E16.5 mouse cortex and cultured in vitro, revealed that ABBA is abundantly expressed in primary glia but not in primary neurons (Fig. 3A). Similarly, cell lysates prepared from glial and neuronal cell lines revealed that ABBA is also specific to glia in cultured cells (Fig. 3B). Together, these studies demonstrated that during CNS development, ABBA is specifically expressed in different types of glia.
Endogenous ABBA localises to the interface between the plasma membrane and the cortical actin cytoskeleton in cultured radial-glial-like cells To examine the cellular localisation of ABBA we used rat C6-R radial glial cell line. These cells mimic radial glia by expressing radial glial markers, adopting a highly polarised morphology in culture and supporting neuronal migration (Friedlander et al., 1998). In C6-R cells, anti-ABBA antibody revealed strong cytoplasmic staining at the perinuclear area, as previously reported for many other regulators of the actin cytoskeleton. In addition, ABBA displayed specific localisation in the cortical regions at the ends of these highly polarised cells (Fig. 3C). Interestingly, costaining with Factin revealed that ABBA localised to the front edge of the cortical actin cytoskeleton (Fig. 3E). Co-labelling these cells with membrane marker CM-Dil revealed that ABBA was localised to the plasma membrane ( Fig. 3F-H). Confocal microscopy analysis demonstrated the localisation of ABBA to lamellipodial structures and membrane ruffles where ABBA was found at the interface between the cortical actin cytoskeleton and plasma membrane (Fig. 3I-K). Thus, although ABBA localised to the plasma membrane surrounding the cortical actin cytoskeleton, it did not localise to the posterior part of the cortical F-actin network or to actin bundles, as reported for most actinbinding proteins.

ABBA interacts with actin monomers and the small GTPase Rac, but lacks F-actinbundling activity
To examine whether the conserved WH2 domain of ABBA (supplementary material Fig.  S1B) binds actin monomers, we monitored the fluorescence of NBD-labelled actin monomers in the presence of increasing amounts of ABBA. Attempts to express and purify recombinant full-length ABBA were unsuccessful. However, we succeeded in purifying the C-terminal fragment of ABBA (residues 274-715), which contains the WH2 domain, for these assays. Interestingly, ABBA 274-715 bound ATP-G-actin with ~four Journal of Cell Science 121 (9) Fig. 4. ABBA binds ATP-G-actin with a high affinity through its C-terminal WH2 domain but does not bundle actin filaments. (A-D) A change in fluorescence of NBD-labelled ATP-and ADP-G-actin was measured over a range of concentrations of ABBA 274-715 . Symbols represent mean data from three experiments and solid lines indicate fitted binding curves with a 1:1 stoichiometry. ABBA interacts with ATP-actin monomers with ~four times higher affinity than ADP-actin monomers. ABBA-mutWH2 did not display detectable binding to G-actin. (E) Low-speed cosedimentation analysis measuring actin-filament-bundling activity of ABBA IM domain (ABBA-IMD). In the presence of α-actinin, majority of actin filaments were in the pellet fraction 'P', demonstrating the actin-filament-bundling or crosslinking activity of the protein. By contrast, under identical conditions, ABBA IMD did not induce detectable actin-filament bundling or crosslinking, and the majority of actin was in the supernatant 'S'. (F) Quantification of bundling activities of ABBA-IMD and α-actinin from two independent experiments. Data are means ± s.e.m. (G) A three-dimensional confocal microscopy analysis from C6-R cells expressing GFP-tagged ABBA-IMD revealed that ABBA-IMD does not localise to peripheral actin bundles (white arrowhead), but instead localises to the plasma membrane surrounding the protruding bundles (black arrowhead). F-actin is red and ABBA-IMD green. Scale bars: 10 μm (left) and 2 μm (magnified region on right). times higher affinity (K D =181 nM) (Fig. 4A) than ADP-G-actin (K D =676 nM) (Fig. 4C). To evaluate the role of the WH2 domain in actin binding, we constructed a mutant protein in which the residues 700 LRR 702 , corresponding to a critical actin-interaction site in other WH2 domains (Chereau et al., 2005), were replaced by alanines (see supplementary material Fig. S1B). This mutant (ABBA 274-715 mutWH2) did not show detectable binding to ATP-or ADP-G-actin (Fig. 4B,D), confirming that ABBA interacts with actin monomers through its WH2 domain.
ABBA was originally classified as an actinbundling protein based on sequence similarity to other IM-domain proteins (Yamagishi et al., 2004). Since the actin bundling activity of IMdomain proteins has been controversial (e.g. Millard et al., 2005;Millard et al., 2007;Mattila et al., 2007;Lee et al., 2007), we tested whether the IM domain of ABBA bundles actin filaments. Surprisingly, we could not detect any F-actinbundling activity with the ABBA IM domain at physiological ionic conditions (100 mM KCl), whereas a well-characterised actin-bundling protein α-actinin displayed strong F-actin bundling activity under identical conditions (Fig. 4E,F). In support to these in vitro results, GFPtagged ABBA IM domain localised to the plasma membrane ( Fig. 4G, black arrowhead), but not to F-actin bundles ( Fig. 4G white arrowhead).
Other members of the IM-domain and BARprotein families were reported to interact with the small GTPases Rac and Cdc42 Krugmann et al., 2001;Miki et al., 2000;Tarricone et al., 2001). GST pull-down assays revealed that ABBA bound both active and inactive forms of Rac, but did not interact with Cdc42 (supplementary material Fig. S2A). Interaction between ABBA and Rac was mediated by the IM domain (supplementary material Fig.  S2B). Staining of endogenous ABBA in C6-R cells expressing GFP-tagged active (12V) or inactive (17N) forms of Rac revealed that they are both enriched in the cortical regions of the cell (data not shown).
ABBA IM domain binds and deforms PtdIns(4,5)P 2 -rich membranes in vitro and in vivo IM domains display structural homology to membrane-deforming BAR domains. Recently, IM-domains of MIM and IRSp53 were shown to bind phosphatidylinositol-4,5-bisphosphate [PtdIns(4,5)P 2 ]-rich membranes and deform them into tubular structures Suetsugu et al., 2006b). To investigate whether ABBA displays similar membrane binding activity, we carried out high-speed cosedimentation assays using synthetic lipid vesicles. In the absence of PtdIns(4,5)P 2 onlỹ 20% of the ABBA IM domain co-sedimented with vesicles, whereas in the presence of PtdIns(4,5)P 2~9 0% of the ABBA IM domain bound to the vesicles in a concentration-dependent manner (Fig.  5A,B). We also constructed a mutant protein (ABBA-IMDmut) where three lysines corresponding to the critical PtdIns(4,5)P 2binding residues of the MIM IM domain , were replaced with alanines (see supplementary material Fig. S1B). In cosedimentation assays, this mutant displayed a severe defect in PtdIns(4,5)P 2 binding (Fig. 5A,B).
To investigate whether the ABBA IM domain affects conformation of membranes, we mixed lipid vesicles with the ABBA IM domain and analysed the samples using electron microscopy. These experiments revealed that the ABBA IM domain displays strong membrane tubulation activity. In the absence of IMdomains, vesicles were evenly distributed in the sample, whereas the wild-type ABBA IM domain induced clustering and tubulation of the vesicles. Similar clustering was not detected in the presence of the ABBA-IMDmut defective in PtdIns(4,5)P 2 binding (Fig. 5C). IM-domain-induced tubular structures were also observed in vesicles containing a more physiological PtdIns(4,5)P 2 Journal of Cell Science 121 (9) concentration (5%) (Fig. 5D). The tubules induced by the ABBA IM domain were typically very long and displayed a regular diameter of approximately 68±13 nm (mean ± s.d.). A GFP-tagged ABBA IM domain induced massive formation of microspikes in C6-R cells, which is in line with its strong membrane tubulation activity in vitro. These microspikes were highly dynamic and extended several micrometers per minute ( Fig. 6A and supplementary material Movie 2).
Since the dynamics of filopodia-like protrusions are considered to be driven by forces created by actin polymerisation, we monitored the growth of ABBA IM-domain-induced microspikes in the presence of the actin polymerisation inhibitor latrunculin A (0.2 μg/μl). This assay revealed a clear reduction in the number of extending microspikes in the presence of latrunculin A, indicating that the microspike formation depends both on the membrane deformation activity of the IM domain and the polymerisation of actin filaments (supplementary material Fig. S5).

Depletion of ABBA leads to defects in lamellipodial dynamics and impairment of glial process extension
Interestingly, GFP-tagged full-length ABBA did not induce strong microspike formation in C6-R cells compared with cells transfected with an isolated IM domain ( Fig. 6A and supplementary material Movies 1 and 2), although it localised to the plasma membrane and membrane ruffles similarly to the endogenous protein (see Fig. 3). Cellular localisation of the endogenous ABBA together with the biochemical data suggested that ABBA might be involved in the regulation of plasma membrane dynamics and cell morphology. To examine this, we silenced ABBA expression by siRNA in C6-R cells. Western blot analysis revealed a dramatic reduction in the levels of ABBA protein at 6-33 hours after siRNA transfection (Fig.  6B). Furthermore, a clear reduction in ABBA protein levels was detected by immunofluorescence in cells transfected with fluorescent ABBA siRNA oligonucleotides compared with neighboring nontransfected cells (data not shown). Depletion of ABBA did not result in gross morphological defects in C6-R cells. Furthermore, no defects in the formation of filopodia induced by activated Cdc42 and Rif constructs were detected in ABBAknockdown cells (data not shown). To examine the dynamic behaviour of ABBA-knockdown cells, we used CellIQ, an automated cell-imaging platform and monitored the extension of freshly plated C6-R cells. Interestingly, a clear reduction in the velocity of the process extension in ABBA-knockdown cells compared with control cells on both laminin-and collagen-coated surfaces was detected (Fig. 6C,D and data not shown). The maximum velocity of the cell process outgrowth on laminin coated surfaces was ~8 μm/hour in ABBA-knockdown cells compared with 20 μm/hour in cells transfected with control siRNA duplexes. The difference was further confirmed by transfecting ABBA-knockdown cells simultaneously with siRNA-resistant GFP-rescue or GFP constructs and measuring the total lengths of the cells 1.5 hours after replating (Fig. 6E,F). This analysis also revealed a significant difference between the average lengths of extending control cells and ABBA-knockdown cells (P<0.01, Tukey test). Expression of the siRNA-resistant GFP-ABBA construct rescued this defect in ABBA-knockdown cells (Fig. 6F).
To examine the importance of lipid and actin interactions for the function of ABBA in cell morphogenesis, we also carried out siRNA rescue experiments using mutant forms of ABBA. Importantly, expression of an ABBA construct in which the lipid-binding and deformation activities of the IM domain were inactivated by point mutations (described in Fig. 5) did not rescue the knockdown phenotype as efficiently as the construct with an inactivated actinbinding WH2 domain, which rescued the phenotype as efficiently as the wild-type construct (Fig. 6F).
The lack of defects in filopodia formation in ABBA-knockdown cells (data not shown) and the localisation of the endogenous protein to the leading edge of the lamellipodium led us to examine possible defects in lamellipodial dynamics in ABBA-knockdown cells. The behaviour of lamellipodia over time was examined by kymograph analysis, where the slope of a protrusion represents lamellipodial extension velocity (Hinz et al., 1999) (Fig. 7A). Cells were re-plated 24 hours after siRNA transfection and the videos for kymographs were acquired 2-6 hours after re-plating from the most rapidly advancing lamellipodial region (total of 20 cells per group). Although the net velocities of the most rapidly advancing lamellipodial regions over the 10 minute period were similar in wild-type and ABBA knockdown cells (~12 μm/10 min), this analysis revealed a significant decrease in the ruffling frequency and in the speed of individual protrusions in ABBA knockdown cells (Fig. 7B,C).

Discussion
Our findings suggest that ABBA is a multifunctional protein that is utilised for optimisation of plasma membrane dynamics and actinpolymerisation machinery during protrusive events in radial glial cells. This hypothesis is supported by several findings: (1) the WH2 domain of ABBA binds 'polymerisation-competent' ATP-actin monomers with high affinity; (2) the IM domain of ABBA displays strong membrane deformation activity both in vitro and in vivo and thus regulates plasma membrane dynamics during formation of membrane protrusions; (3) endogenous ABBA localises to the interface between the plasma membrane and the actin cytoskeleton in cells; (4) knockdown of ABBA from C6-R cells leads to defects in protrusive events at the lamellipodia of extending radial glial processes -the velocity of individual protrusions is slower and the number of ruffles is decreased in ABBA knockdown cells compared with the control cells.

ABBA is expressed in special subsets of radial glia
During CNS development, ABBA was expressed in specific transient glial structures, whereas no expression was detected in embryonic neurons. The earliest ABBA expression was detected in the midline floorplate, where the first glial cells appear shortly after gastrulation in mammalian embryos. The floorplate is an important signalling center that guides commissural axons across the midline and controls the regional differentiation of neurons along the spinal cord dorsoventral axis (Patten et al., 2003;Strähle et al., 2004). ABBA was detected later in more widely distributed radial glia throughout the nervous system. A massive radial glial raphe structure becomes apparent in the developing brainstem midline around E13-14.5 and strong expression of ABBA was detected in this structure. The raphe is thought to serve as a control point for axonal extensions through the midline (Mori et al., 1990). In support of the developmental tissue expression data, ABBA protein was found to be abundant in glial cell lines and isolated primary glia, but was undetectable in neuronal cell lines and isolated primary neurons.
Interestingly, RNA in situ hybridisation analysis demonstrated that ABBA mRNA was distributed throughout the glial processes and concentrated in the radial glial end-feet indicating that ABBA mRNA is transported along the glial processes to the scene of translation. This suggests that a continuous high-level production of ABBA protein in the radial glial extensions may be important during CNS expansion and differentiation. Extension of radial glial end-feet to the pial surface is important for neuronal migration and might have implications for their maturation (Götz et al., 1998;Frotscher et al., 2003;Haubst et al., 2006).

ABBA is a key regulator of glial cell morphology
We found that the extension velocity of ABBA-depleted radial-glialike C6-R cells was severely diminished compared with that in control cells. The reported growth velocity of radial glial protrusions in vivo is approximately 30 μm/hour (Miyata et al., 2001), which is consistent with the rate of process elongation in wild-type C6-R cells derived from our experiments (~20 μm/hour). However, depletion of ABBA did not affect the net velocity of the most rapidly growing lamellipodial regions, but instead reduced the speed of individual plasma membrane protrusions and decreased the ruffling frequency. In line with these data, it was proposed that net cell translocation reflects an integration of cell behaviour over many cycles of protrusion and withdrawal (Bear et al., 2002).
Although depletion of ABBA resulted in clear defects in C6-R cells, plasma membrane dynamics and cell extension were not completely diminished in ABBA-knockdown cells. It is thus possible that the membrane-binding or deformation activity of ABBA (see below) is not absolutely required for formation of membrane protrusions in C6-R cells or that other IM-domain proteins may compensate for the lack of ABBA in C6-R cells. The latter alternative is supported by our RT-PCR analysis showing that IRSp53, MIM and IRTKS are also expressed in C6-R cells (data not shown). Thus, in the future it will be important to study the possible redundant roles of other IM-domain proteins in these and other cells types by simultaneous siRNA knockdown experiments.
Interestingly, a recent microarray study revealed downregulation of ABBA mRNA in the brain of Emx2-knockout mice (Li et al., 2006). Emx2 is a homeodomain-containing transcription factor that is important in development and patterning of the neocortex (Cecchi, 2002). Importantly, Emx2-knockout mouse brains display defects in the morphology of radial glia fibers (Mallamaci et al., 2000). Our data, demonstrating an important role for ABBA in radial glia morphogenesis, suggest that this phenotype may arise from decreased levels of ABBA as well as other cytoskeletal regulators in these mice. In the context of animals, targeted deletion of the ABBA gene would be essential to study the role of this protein in radial glia.

Regulation of actin and plasma membrane dynamics by ABBA
ABBA was initially named as 'an actin-bundling protein' based on its sequence similarity to other IM-domain proteins. However, we did not detect any actin-filament-bundling activity of the IM domain of ABBA. Furthermore, neither the GFP-tagged ABBA IM domain nor the endogenous protein localised to actin bundles in vivo as would be expected for an actin-bundling protein. Instead, our analysis revealed that the ABBA IM domain binds PtsIns(4,5)P 2 -rich membranes with high affinity and generates membrane curvature similarly to that recently reported for the IMdomain proteins IRSp53 and MIM (Suetsugu et al., 2006b;Mattila et al., 2007). However, from the present EM data, the direction of the membrane deformation cannot be concluded, and this would require extensive electron tomography analysis of the of the membrane tubules induced by the ABBA IM domain. Expression of the GFP-tagged ABBA IM domain in cells induced a massive quantity of filopodia-like membrane protrusions. The extension rate of these protrusions was significantly reduced but not completely Journal of Cell Science 121 (9) abolished upon treatment of the cells with latrunculin A, suggesting that an intact actin cytoskeleton plays an important, but not an essential role in the ABBA IM-domain-induced microspike formation.
Importantly, subcellular localisation of endogenous protein together with siRNA studies suggest that, at least in C6-R cells, ABBA does not promote filopodia formation, but is instead involved in controlling lamellipodial dynamics. Supporting this view, ABBA binds directly to Rac, a well-characterised regulator of lamellipodia dynamics. It is thus likely that interactions with other protein(s) at the leading edge of extending radial glial cells activate ABBA to promote controlled dynamics of lamellipodial protrusions. Further studies will be required to identify these putative binding partners of ABBA.
Previous studies demonstrated that a homologue of ABBA, IRSp53, regulates ruffle formation in fibroblasts and spine formation in neurons (Choi et al., 2005;Suetsugu et al., 2006a). However, the possible physiological role of membrane deformation activity of the IRSp53-MIM family proteins has not been reported and the exact mechanism(s) by which these proteins contribute to cell morphogenesis is unknown. Our RNAi and rescue analyses demonstrate that ABBA regulates plasma membrane dynamics in C6-R cells, and suggest that its membrane-binding or deformation activity is necessary for the efficient formation of cell extensions. Similarly, IRSp53 was recently shown to promote lamellipodia formation and leading-edge extension in cultured animal cells (Suetsugu et al., 2006a). The critical role of membrane-binding or deformation activity for the function of IRSp53-MIM-ABBA family proteins is also supported by our recent studies demonstrating that microspike formation as a result of overexpression of MIM in COS-7 cells is dependent on the intact IM domain (Mattila et al., submitted). However, it still remains to be determined whether IRSp53-MIM family proteins regulate plasma membrane dynamics by directly deforming the protruding membranes or whether the IM domain functions as a membrane-curvature sensor that localises IRSp53-MIM-ABBA, together with associated proteins, to the correct sites at the plasma membrane.
In addition to plasma membrane, ABBA also binds actin monomers, similarly to its close relative MIM. Importantly, our analysis revealed that ABBA binds ATP-actin monomers with significantly higher affinity than ADP-actin monomers, suggesting that it may promote the addition of actin monomers to the barbed ends of filaments, in a similar manner to other WH2-domain proteins, such as ciboulot and WASP (Hertzog et al., 2004;Dayel and Mullins, 2004). In addition, the WH2 domain of ABBA may interact dynamically with polymerising filament barbed ends, attaching them to plasma membrane by a similar mechanism to that reported recently for N-WASP (Co et al., 2007). However, our RNAi-rescue experiments suggest that, in contrast to membranebinding or deformation activity, actin-monomer binding through the WH2 domain is not essential for the function of ABBA in C6-R cells. In this context, it is also important to note that the actin-binding WH2 domain is not present in all IM-domain proteins (Lee et al., 2007;Millard et al., 2007). Thus, actin-monomer binding through the WH2 domain may link IM-domain proteins more efficiently to the cytoskeleton during the formation of membrane protrusions.
In conclusion, this study identified ABBA as a protein that couples plasma membrane deformation to the actin cytoskeleton. Therefore, our study provides support to previous hypotheses and theoretical models suggesting that actin dynamics must be linked to direct membrane deformation to efficiently alter the morphology of the plasma membrane during formation of protrusions (Dawson et al., 2006;Veksler and Gov, 2007;Takenawa and Suetsugu, 2007). To our knowledge, ABBA is also the first regulator of actin dynamics and cell morphology that is strongly enriched in radial glia. In the future, it will be important to elucidate how the activity and localisation of ABBA are regulated by various signalling pathways to promote the precisely controlled extension of radial glial processes.

Protein expression and purification
All ABBA constructs were expressed as His-tag fusion proteins in E. coli BL21 (DE3) cells. Proteins were enriched with Ni-NTA Superflow beads (Sigma-Aldrich) and further purified through a Superdex-75 HiLoad gel filtration column (GE Healthcare). Human skeletal muscle α-actinin 2 and the small GTPases Rac and Cdc42 were expressed and purified as described . Actin was prepared from rabbit skeletal muscle as previously described (Pardee and Spudich, 1982).

Antibody production
A rabbit was immunised with purified recombinant mouse ABBA 274-683 protein fragment and the serum affinity-purified using this protein fragment immobilised to CNBr-activated Sepharose 4B beads (Pharmacia).

Northern blotting, in situ hybridisations and immunohistochemistry
Northern blotting and in situ hybridisations were carried out as described (Mattila et al., 2003) by using a mouse ABBA 1290-1927 cDNA probe and [ 35 S]UTP-labelled riboprobes prepared from the linearised pBSIIKS-ABBA 1-747 plasmid, respectively. For northern blots, the probe was hybridised to commercial mouse multiple tissue filter according to the manufacturer's instructions (Clontech). Immunohistochemistry was performed with anti-ABBA (1:1000), anti-RC2 (1:500; Developmental Studies Hybridoma Bank) and/or anti-Tuj1 (Neuronal Class III β-tubulin; 1:500; BAbCO) primary antibodies overnight at 4°C. Secondary antibodies were goat-anti-mouse IgM Alexa Fluor 488 or goat-anti-rabbit IgG Alexa Fluor 594 (Molecular Probes). Sections were mounted with Vectashield (Vector) and photographed with an Olympus DP70 CCD-camera attached to an Olympus AX70 microscope. Confocal imaging was performed as described .

Cell culture and immunofluorescence
The primary neurons and glia were obtained from day 16 embryos. Primary glia and C6-R and NIH3T3 cells were maintained in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum (Hyclone), 2 mM penicillin, streptomycin and L-glutamine (Sigma-Aldrich). Cortical neurons were grown on coverslips coated with poly-DL-ornithine at a density of 0.2ϫ10 6 cells/coverslip in Neurobasal medium supplemented with B27 (Gibco, Life Technologies). Transfections of GFP constructs were carried out using FuGENE 6 transfection reagent (Roche). For immunofluorescence analysis, C6-R cells were plated on coverslips precoated with 25 μg/ml laminin. Immunofluorescence labelling was performed as described previously (Vartiainen et al., 2000) with the following reagent dilutions: Alexa Fluor 568 phalloidin (Molecular Probes), 1:200 and anti-ABBA, 1:50. For membrane staining, C6-R cells were incubated with 2 μM Cell tracker CM-Dil (Molecular Probes) for 5 minutes at 37°C, and then for additional 15 minutes at 4°C after which the medium was changed. Latrunculin A treatment, microscopy, image acquirement and processing were performed as described (Hotulainen and Lappalainen, 2006;Mattila et al., 2007).

Actin assays
The binding of wild-type ABBA 274-715 and ABBA 274-715 -mutWH2 protein fragments to NBD-labelled actin was carried out as described (Bertling et al., 2007). In the actin-bundling assay, samples were sedimented at 17,000 g for 30 minutes and the assay was otherwise carried out as described (Mattila et al., 2003).

GST pull-down assay
A 60 mm dish of ABBA-GFP transfected HeLa cells was lysed in 100 mM NaCl, 20 mM Tris-HCl, pH 7.5, 0.5 mM PMSF + protease inhibitor cocktail (Roche). 150 μg cleared lysates was incubated for 60 minutes at 4°C with 20 μg recombinant GST or GST-GTPases immobilised on glutathione-agarose beads (Pharmacia). Beads were washed three times with lysis buffer and subjected to western blotting with anti-ABBA antibody. Direct binding of the ABBA IM-domain to the GTPases was analysed as previously described .

Cell-spreading assays
ABBA-depleted C6-R cells were replated 24 hours after transfection into 24-well plates precoated with laminin (25 μg/ml). Plates were incubated in CellIQ cell culturing platform (Chip-Man Technologies) and imaged every 30 minutes for 12 hours. For each well, six image fields were collected. For data analysis, RAMON (rapid automated measurement of neurites) software was used. For rescue experiments, cells were transfected with siRNA oligos (0 hour) and GFP-expression constructs (6 hours) resistant to the siRNA oligos, replated on glass coverslips precoated with laminin (28.5 hours), fixed (30 hours) and stained with Alexa Fluor 568-labelled phalloidin. Fifteen cells were imaged per group from more than three independent experiments and the total lengths of the cells in longitudinal direction were measured using ImagePro software (Media Cybernetics).

Kymography and cell tracking
C6-R cells were re-plated 24 hours after siRNA transfection on 25 μg/ml laminincoated glass-bottomed dishes. Time-lapse images were acquired every 3 seconds for 10 minutes with an inverted microscope (IX70; Olympus) equipped with a Polychrome IV monochromator (TILL photonics) and Uapo 40ϫ/1.35 (water) objective. Kymographs were generated along a 1-pixel-wide line that was drawn by hand perpendicularly to the edge of a protruding cell and constructed using IMAGEJ software (http://rsb.info.nih.gov/ij). Fluctuations <0.5 μm (4 pixels) in magnitude were neglected. Calculation of protrusion velocities was carried out as previously