Skip to main content
Advertisement

Main menu

  • Home
  • Articles
    • Accepted manuscripts
    • Issue in progress
    • Latest complete issue
    • Issue archive
    • Archive by article type
    • Special issues
    • Subject collections
    • Cell Scientists to Watch
    • First Person
    • Sign up for alerts
  • About us
    • About JCS
    • Editors and Board
    • Editor biographies
    • Travelling Fellowships
    • Grants and funding
    • Journal Meetings
    • Workshops
    • The Company of Biologists
    • Journal news
  • For authors
    • Submit a manuscript
    • Aims and scope
    • Presubmission enquiries
    • Fast-track manuscripts
    • Article types
    • Manuscript preparation
    • Cover suggestions
    • Editorial process
    • Promoting your paper
    • Open Access
    • JCS Prize
    • Manuscript transfer network
    • Biology Open transfer
  • Journal info
    • Journal policies
    • Rights and permissions
    • Media policies
    • Reviewer guide
    • Sign up for alerts
  • Contacts
    • Contact JCS
    • Subscriptions
    • Advertising
    • Feedback
    • Institutional usage stats (logged-in users only)
  • COB
    • About The Company of Biologists
    • Development
    • Journal of Cell Science
    • Journal of Experimental Biology
    • Disease Models & Mechanisms
    • Biology Open

User menu

  • Log in

Search

  • Advanced search
Journal of Cell Science
  • COB
    • About The Company of Biologists
    • Development
    • Journal of Cell Science
    • Journal of Experimental Biology
    • Disease Models & Mechanisms
    • Biology Open

supporting biologistsinspiring biology

Journal of Cell Science

  • Log in
Advanced search

RSS   Twitter  Facebook   YouTube  

  • Home
  • Articles
    • Accepted manuscripts
    • Issue in progress
    • Latest complete issue
    • Issue archive
    • Archive by article type
    • Special issues
    • Subject collections
    • Cell Scientists to Watch
    • First Person
    • Sign up for alerts
  • About us
    • About JCS
    • Editors and Board
    • Editor biographies
    • Travelling Fellowships
    • Grants and funding
    • Journal Meetings
    • Workshops
    • The Company of Biologists
    • Journal news
  • For authors
    • Submit a manuscript
    • Aims and scope
    • Presubmission enquiries
    • Fast-track manuscripts
    • Article types
    • Manuscript preparation
    • Cover suggestions
    • Editorial process
    • Promoting your paper
    • Open Access
    • JCS Prize
    • Manuscript transfer network
    • Biology Open transfer
  • Journal info
    • Journal policies
    • Rights and permissions
    • Media policies
    • Reviewer guide
    • Sign up for alerts
  • Contacts
    • Contact JCS
    • Subscriptions
    • Advertising
    • Feedback
    • Institutional usage stats (logged-in users only)
Research Article
Three-dimensional reconstruction and analysis of the tubular system of vertebrate skeletal muscle
Isuru D. Jayasinghe, Bradley S. Launikonis
Journal of Cell Science 2013 126: 4048-4058; doi: 10.1242/jcs.131565
Isuru D. Jayasinghe
School of Biomedical Science, The University of Queensland, Brisbane, QLD 4072, Australia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Bradley S. Launikonis
School of Biomedical Science, The University of Queensland, Brisbane, QLD 4072, Australia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: b.launikonis@uq.edu.au
  • Article
  • Figures & tables
  • Supp info
  • Info & metrics
  • PDF + SI
  • PDF
Loading

Article Figures & Tables

Figures

  • Fig. 1.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 1.

    Reconstruction of a 3D skeleton of the mammalian skeletal muscle t-system. (A) A single confocal section of a mechanically skinned adult rat EDL fibre with 5 mM Fluo-5N trapped within the t-system. Scale bar: 6 µm. (B) 3D surface rendered skeleton of the t-system reconstructed from a 38×20×10 µm deconvolved confocal image volume illustrates the connectivity of the mammalian t-system across the width of the fibre. Note that the rows of tubule doublets are clearer in some regions of the 3D skeleton than others because of angled alignment of sarcomeres across the width of the fibre. Scale bar: 5 µm. (C) The magnified view of a 6×8×10 µm sub-volume of the skeleton. Also indicated are the longitudinal tubules extending across the A-band (arrowheads) and I band (asterisks). Scale bar: 2 µm. (D) A histogram of the percentage of tubules as a function of the directional angle in relation to the transverse plane of the fibre indicates 4.9% of tubules extend longitudinally either across the A-band or the I-band.

  • Fig. 2.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 2.

    Reconstruction of a 3D skeleton of the amphibian skeletal t-system. (A) A single confocal section of a mechanically skinned toad iliofibularis fibre with 10 mM Fluo-5N trapped within the t-system. Scale bar: 5 µm. (B) A 3D surface rendered skeleton of the toad t-system reconstructed from a 34×26×7 µm deconvolved confocal image volume illustrating the 3D geometry of tubules. Regions containing a high density of longitudinal tubules (asterisk) were observed. Some of the longitudinal tubules (arrowheads) also appeared to be blind-ended at one end. Scale bar: 4 µm. (C) The magnified view of a 9×5×6 µm sub-volume of the 3D skeleton further illustrates the geometries of the longitudinal tubules and transverse tubules seen at the z-lines. Scale bar: 2 µm. (D) Directionality analysis illustrated by a histogram of the percentage of tubules as a function of the angle relative to the transverse plane shows that a minimum of 2.2% of tubules of the t-system were longitudinal tubules.

  • Fig. 3.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 3.

    Spatial relationship between the t-system and nuclei of mammalian and amphibian skeletal muscle. (A) The longitudinal lateral view of a peripherally located nucleus vitalized with PI (blue) and the skeleton of the t-system (orange) in a mechanically skinned rat EDL fibre. (B) The orthogonal (transverse view) of a 5-µm-deep volume illustrates that the nucleus is closely surrounded by tubules that extend deeper into the fibre. Arrowheads indicate previously reported sub-sarcolemmal tubules that extend near the periphery of the fibre. (C) The longitudinal view of a centrally located nucleus (blue) and the skeleton of the t-system (green) in the toad illustrates the dense tubular mesh wrapping around the nuclei. (D) The orthogonal (transverse) view of a 5-µm-deep volume of the skeleton highlights the cytoplasmic space devoid of tubules, occupied by the nucleus. (E,F) Analysis of the density of tubules as a function of the Euclidean distance from the edge of the region of PI labelling in rat (E) and toad (F) fibres indicate a near-uniform density of tubules in cytoplasmic regions further than ∼0.75 µm away. In both species, an ∼25–50% increase in the tubule densities was observed between 0.2 and 0.7 µm from the edge of the PI staining. Scale bars: 5 µm.

  • Fig. 4.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 4.

    Simulation of the relationship between t-tubule diameter and the convolved image, and estimation of local tubule diameters of the t-systems in living skeletal muscle fibres. (A) A series of simulated images of t-tubules of varying diameters (d). (B,C) The point spread function of the imaging system is elongated in the z-dimension compared to x- and y-dimensions, which accentuates the intensity of tubules whose orientations have a non-zero vertical component (B). This is overcome by convolving the 3D confocal data volumes to effectively achieve an approximate symmetry in x-, y- and z-dimensions (C). Scale bar for B and C: 0.5 µm. (D) A plot showing the normalized mean intensity above background measured along the centre line of the t-tubule of the confocal fluorescence image following the re-blurring (circles). Note that the narrowest detectable t-tubule corresponds to a diameter of ∼40 nm as shown in the magnified region of the plot (inset). (E,F) maximum-intensity projections (2-µm-deep) of 3D t-system skeletons of a rat EDL fibre (E) and a toad iliofibularis fibre (F), colour-coded for the estimated mean local tubular diameters. (G,H) Histograms showing the percentage of tubules as a function of the mean local diameter in rat (G) and toad (H) fibres. The range and mean diameters are similar (rat and toad fibres were 85.4±14.4 nm and 91.2±20.1 nm, respectively; means ± s.d.). Scale bars for E and F: 2 µm.

  • Fig. 5.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 5.

    The effect of osmolarity on the tubule diameters in the rat and toad t-system. (A–C) Histograms showing the distributions of estimated mean tubule diameter of mechanically skinned rat EDL fibres that were incubated in (A) isosmotic (280 mosmol/kg); (B) hypo-osmotic (200 mosmol/kg); (C) hyperosmotic (1000 mosmol/kg) internal solutions are shown on the left. 2-µm-deep projections of the colour-coded maps of the local tubule diameters in the respective osmolarity conditions are shown on the right. (D–F) Histograms for the estimated mean tubule diameter in skinned toad fibres incubated in (D) isotonic 255 mosmol/kg, (E) hypotonic 200 mosmol/kg and (F) hypertonic 1000 mosmol/kg internal solutions for 15 minutes. The colour-coded maps of the local tubule diameters in isotonic, hypertonic and hypertonic conditions, shown on the right, illustrate that changes in local diameter in the transverse tubules were typically larger than those in the longitudinal tubules (arrowheads). Scale bars: 2 µm. Colour scale illustrates estimated mean tubule widths in nm.

  • Table 1.
  • Fig. 6.
    • Download figure
    • Open in new tab
    • Download powerpoint
    Fig. 6.

    Visualization of geometrically realistic reconstructions of the rat and toad skeletal muscle t-systems. (A) Reconstructions used a structuring element that dilated the local skeleton symmetrically (aspect ratio of 1.0) by a width equal to the estimated mean tubule width (d) as shown. (B,C) Pairs of tilted views of the reconstructions in rat EDL fibres and toad iliofibularis fibres, respectively. (D) A more realistic morphology was achieved by dilating the skeleton of transverse tubules asymmetrically (at 1.54d in the transverse plane and 0.44d longitudinally) to achieve an aspect ratio of 3.5. (E,F) Tilted views of the rat and toad t-systems rendered assuming that all of the transverse tubules were maintained in a flattened morphology with an average cross-sectional aspect ratio of 3.5. Scale bars: 2 µm.

Previous ArticleNext Article
Back to top
Previous ArticleNext Article

This Issue

Keywords

  • Tubular system
  • Transverse tubules
  • t-tubules
  • Reconstruction
  • Nucleus
  • Confocal

 Download PDF

Email

Thank you for your interest in spreading the word on Journal of Cell Science.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
Three-dimensional reconstruction and analysis of the tubular system of vertebrate skeletal muscle
(Your Name) has sent you a message from Journal of Cell Science
(Your Name) thought you would like to see the Journal of Cell Science web site.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Research Article
Three-dimensional reconstruction and analysis of the tubular system of vertebrate skeletal muscle
Isuru D. Jayasinghe, Bradley S. Launikonis
Journal of Cell Science 2013 126: 4048-4058; doi: 10.1242/jcs.131565
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
Research Article
Three-dimensional reconstruction and analysis of the tubular system of vertebrate skeletal muscle
Isuru D. Jayasinghe, Bradley S. Launikonis
Journal of Cell Science 2013 126: 4048-4058; doi: 10.1242/jcs.131565

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Alerts

Please log in to add an alert for this article.

Sign in to email alerts with your email address

Article navigation

  • Top
  • Article
    • Summary
    • Introduction
    • Results
    • Discussion
    • Methods
    • Acknowledgments
    • Footnotes
    • References
  • Figures & tables
  • Supp info
  • Info & metrics
  • PDF + SI
  • PDF

Related articles

Cited by...

More in this TOC section

  • Vacuolar protein Tag1 and Atg1–Atg13 regulate autophagy termination during persistent starvation in S. cerevisiae
  • Aberrant cytoplasmic localization of ARID1B activates ERK signaling and promotes oncogenesis
  • Importin-9 regulates chromosome segregation and packaging in Drosophila germ cells
Show more RESEARCH ARTICLE

Similar articles

Other journals from The Company of Biologists

Development

Journal of Experimental Biology

Disease Models & Mechanisms

Biology Open

Advertisement

Introducing FocalPlane’s new Community Manager, Esperanza Agullo-Pascual

We are pleased to welcome Esperanza to the Journal of Cell Science team. The new Community Manager for FocalPlane, Esperanza is joining us from the Microscopy Core at Mount Sinai School of Medicine. Find out more about Esperanza in her introductory post over on FocalPlane.


New funding scheme supports sustainable events

As part of our Sustainable Conferencing Initiative, we are pleased to announce funding for organisers that seek to reduce the environmental footprint of their event. The next deadline to apply for a Scientific Meeting grant is 26 March 2021.


Read & Publish participation continues to grow

"Alongside pre-printing for early documentation of work, such mechanisms are particularly helpful for early-career researchers like me.”

Dr Chris MacDonald (University of York) shares his experience of publishing Open Access as part of our growing Read & Publish initiative. We now have over 150 institutions in 15 countries and four library consortia taking part – find out more and view our full list of participating institutions.


Cell scientist to watch: Romain Levayer

In an interview, Romain Levayer talks about starting his own lab, his love for preprints and his experience of balancing parenting with his research goals.


Live lactating mammary tissue

In a stunning video, Stewart et al. demonstrate warping of the alveolar unit due to basal cell-generated force as part of their recent work investigating roles for mechanically activated ion channels in lactation and involution.

Visit our YouTube channel to watch more videos from JCS, our sister journals and the Company.


JCS and COVID-19

For more information on measures Journal of Cell Science is taking to support the community during the COVID-19 pandemic, please see here.

If you have any questions or concerns, please do not hestiate to contact the Editorial Office.

Articles

  • Accepted manuscripts
  • Issue in progress
  • Latest complete issue
  • Issue archive
  • Archive by article type
  • Special issues
  • Subject collections
  • Interviews
  • Sign up for alerts

About us

  • About Journal of Cell Science
  • Editors and Board
  • Editor biographies
  • Travelling Fellowships
  • Grants and funding
  • Journal Meetings
  • Workshops
  • The Company of Biologists

For Authors

  • Submit a manuscript
  • Aims and scope
  • Presubmission enquiries
  • Fast-track manuscripts
  • Article types
  • Manuscript preparation
  • Cover suggestions
  • Editorial process
  • Promoting your paper
  • Open Access
  • JCS Prize
  • Manuscript transfer network
  • Biology Open transfer

Journal Info

  • Journal policies
  • Rights and permissions
  • Media policies
  • Reviewer guide
  • Sign up for alerts

Contacts

  • Contact JCS
  • Subscriptions
  • Advertising
  • Feedback

Twitter   YouTube   LinkedIn

© 2021   The Company of Biologists Ltd   Registered Charity 277992